Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05272 ATGGAGAATCAAGTAAAGGAAAACGTGAAGATATATTTCAATATTCCACAAGTTCATAGCTTAGAGCCTTGTAGGGAAGAAGGTAAGGATAGAAAAATTCAAGAGATCAACAATGGACATATTATGAACCTTGCCATCACCAAGTGCGACGGGGAGTCGCAAGGAAAATTGGCTCTAGTAATTAATCACTACACGGAGACACTAAATCAAGAAATATCACATCTTTTAGGGTACCCTACTAATCAGAGCTTTGATTATGGCGCATTAGCACCTTTAATGCAATTTCACATAAACAATATTGGTGATCCATTTATTGGAAGCAGTTATGGTGTAAATTCAGCCAAGTTTGAAGTTAGTGTGCTTGATTGGTTTGCTAAACTATGGGAAATAAAGAAGGAAGAATATTGGGGATACATCACAAGTGGTGGAAGTGAAGGCAATTTTCATGGACTTTTAATAGGAAGAGAAAAATTTCCAGATGGTATCATATATGCCTCACAAGACTCCCATTATTCAATATTCAAGATTGCAAAAATGTATAGAATGCAATGCATGAAAGTTAGCACATTAATCACTGGTGAGATTGATTGTGCTAATCTGAAGACTTTACTTCTTGCACATAAGGACAAACCAGCTATCATCAATTTAAATATAGGAACAACTATGAAAGGAGCTGTTGATAACATTGATATGGTAATACAAACACTTGAGGAAACTGGTTTTACTCGTGATCGATTCTATATTCATTGTGATGGAGCTTTGCTTGGAATTATGTTGCCACTTATTAAACAGGCTCCAATGATTAGCTTCAAGAAACCCATCGGAAGTATAACTATTTCGGGCCATAAATTTTTGGGATGTCCTACACCTTGCGGGGTTTTATTAACTCGCTTAGAACATACCAACACCTTCTCTAAAGATATTGAAGTGATTGGTTCTAGAGATGCCACAATTAGTGGTAGTCGAAGTGGTCATGCTCCAATCTTTATTTGGTATGCTTTACAAAAAAGAGGTTTAATAGGACTTAAAAATGAAGTGCAAAAGTGCTTAATGAATGCACGTTACTTAAAAGATAAACTTTGTGATGTTGGTATTAGTACAATGTTAAATGAGTTTAGCAATACGGTTGTTTTTGAGAAGCCATTAGATTGTGAATTTATTCGAAGATGGAATTTAGCATATCAAGGAAATATTGCACATGTGGTGGTGATGCAACATGTTACTATTGAAATGTTGAATTCTTTTGTTGATGAGTTTAGTCAAAAACAAAAAATTTGGTATGGATTGAGAAAGCCTATATGCATTGCAAACGAAATTGGTGCTGAAAATTGTGCTTGTATGTTGCACAAATGA 1353 0.3503 MENQVKENVKIYFNIPQVHSLEPCREEGKDRKIQEINNGHIMNLAITKCDGESQGKLALVINHYTETLNQEISHLLGYPTNQSFDYGALAPLMQFHINNIGDPFIGSSYGVNSAKFEVSVLDWFAKLWEIKKEEYWGYITSGGSEGNFHGLLIGREKFPDGIIYASQDSHYSIFKIAKMYRMQCMKVSTLITGEIDCANLKTLLLAHKDKPAIINLNIGTTMKGAVDNIDMVIQTLEETGFTRDRFYIHCDGALLGIMLPLIKQAPMISFKKPIGSITISGHKFLGCPTPCGVLLTRLEHTNTFSKDIEVIGSRDATISGSRSGHAPIFIWYALQKRGLIGLKNEVQKCLMNARYLKDKLCDVGISTMLNEFSNTVVFEKPLDCEFIRRWNLAYQGNIAHVVVMQHVTIEMLNSFVDEFSQKQKIWYGLRKPICIANEIGAENCACMLHK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05272 450 SUPERFAMILY PLP-dependent transferases 68 421 IPR015424 -
Trre1g05272 450 PANTHER - 28 450 - -
Trre1g05272 450 Gene3D Aspartate Aminotransferase, domain 1 334 424 IPR015422 GO:0003824
Trre1g05272 450 Pfam Pyridoxal-dependent decarboxylase conserved domain 113 368 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre1g05272 450 Gene3D - 91 333 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05272 Trre-Chr1 58642873 58645553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05272 218 358 Calmodulin-binding Proteins AT1G65960 26.452 1.54e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05272 K25193 - gmx:100781665 625.55