Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05271 ATGGCATCCAATAATTCATCCATCAACCAAACAAAATGTGTACATCAAATTAATAACAATGAACAACATGAAACACTAGAGATTGAAAGCAATGAATTTGATTACTCAAAAAGATCACAATGGCTTCGCGCCGCGGTTTTAGGAGCTAATGATGGATTAGTTTCAACAGCATCACTAATGATGGGTGTAGGAGCAGTAAAACAAGACATAAAAGCCATGATCTTGTCAGGTTTTGCTGGACTTGTAGCTGGTGCTTGTAGCATGGCAATAGGTGAGTTTGTTTCTGTTTATTCACAACTTGACATTGAAATTGCACAATTGAAAAGAGAAAAAAATATTGAAAGAGGTGATAATATTGAAGAAGAAGATGTTATTGAAAAAGAAAGTTTGCTAAATCCTTTACAAGCAGCAGCAGCTTCAGCTTTAGCATTTTCAATAGGTGCAATAGTGCCACTTCTTGCAGCATCTTTTATTAAAGATTATAAGGTAAGGGTAGGTGTTGTTTTGGGAGCAGTTAGTTTTGCTTTGGTTGTGTTTGGTTTGTTAGGAGCAATGTTGGGTAAGGCTCCAATTTTAAAGTCATGTTTGAGGGTCTTGCTTGGAGGTTGGGTTGCTATGGCTATTACTTTTGGGTTAACCAAGTTGATTGGATCAAGTGGGCTTTAG 666 0.3694 MASNNSSINQTKCVHQINNNEQHETLEIESNEFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEIAQLKREKNIERGDNIEEEDVIEKESLLNPLQAAAASALAFSIGAIVPLLAASFIKDYKVRVGVVLGAVSFALVVFGLLGAMLGKAPILKSCLRVLLGGWVAMAITFGLTKLIGSSGL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05271 221 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 19 216 IPR008217 GO:0005384|GO:0030026
Trre1g05271 221 Pfam VIT family 121 213 IPR008217 GO:0005384|GO:0030026
Trre1g05271 221 Pfam VIT family 42 122 IPR008217 GO:0005384|GO:0030026
Trre1g05271 221 CDD Nodulin-21 40 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05271 Trre-Chr1 58637509 58638174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05271 18 221 Nodulin-like Gene Family AT3G43660 67.647 7.01e-98 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05271 K22736 - gmx:100814343 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00994 11 9049486 9050127 Trre1g05271 1 58637509 58638174 PCT