Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05268 ATGGGGAAAAAGAAGCCATCAATTCGCGACGACGAGAATCCTCCGCAACAAGGCGGCGGTGGGAAATCGAAAAAGAAGGCTCCGATTATCGATGACGATGAGTATTCTATCGGAACTGAGCTTTCGGAGGAAACGGCCGCTCCGGCTGTAGTGGATGAGAAACCTGGGAAAAAGAAAGGTAAGAAAGGTAACGCTAAATCTTCTGCTAATGATAATGGTGATGATTTTGATGATGTTGATGATGATGTGCCTGAAATTGTTTTTGCTGGGAAGAAAAAGGGAAAATCGAAAAAAAGTGGTGGGGGGAGTGTGTTTAGTGCTGCAGGTGGGTTTGGTTTGCTTGGGGATGATGAGGATGGTGATAAGGATGATGATGAAGAGGAGAAATCGGAGTTAACCGGTGAGGGAGATGGTGATGAGGATGATGAACCGATTGTTTTTAGTGGGAAGAAGAAGAAGTCCTCGAAGGGTTCGAAGAAAGGAGGAGGTAGTTTGTTTAGTGCATTAGATGAGATTGATGATGGAGATGAGGAGAGTAAGAATGAAAAGGCGGAAGATGATGATAATGATGAAGATATAGGACCGATCACATTCTCGGGGAAGAAAAAGAAATCGTCTAAGTCTAAGAAGGCGGGTACAGCTATTCCGGATGAGGATAGTGTTTCTGTATCGGAGTCTGCCAAAGGTGGCGATGAAAATGACGAGGATGATGTTTCTTTTGCGTTTACTGGTAAAAAGAAGTCTTCTAAAAAGAAGAGTGGTAGTGCTGCTGCCAGAGTGAGTGATGACATTATCGATGCTGTTGAGGCTGAGAAGCCTAGTGTTGGAGAAGTGAGTAATGCTAATGTTGACAATGGTAATATAAGTAAGAGTGAAGAAGTCGTTGGAACTTCTAAAAATAAGAAGAAGAATAAGAAGAAGGGTGGGAGGACAAAAGAAGAGGAGGACGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTCCGGCAAAACCTGCTGCTCCTCCGCTGCAGGATGATAAAGTTCAGCCTGCTCCTGAAGTCGTTTCTGCTGCTGGTGCTTCGGTGGAAAAGGAGGGAGAAGAGGAGACTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCAGCAGCAGCAGCCGGAAGTGCACCGGTTGTTGAAACTGTAGAAGAGAAAGTTGAGATAAGTGAACCAAAGAAAATTGATTCGAAGACCAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAATTATTGGCTCGAAGACAAGAGGCTGAAGAGAGAAAGAAAAGAGAAGAGGAAGAGAAGCTAAGGAAAGAAGAAGAGGAGCGACAAAGGCTAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTATAAAGAAGGAAAAAGAAAAGGAAAAACTCTTGAGAAAGAAGCTAGATGGTAAATTGTTAACTGCTAAGCAGAAAGAAGAAGCCCGGCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGTGTGACTCTTCCTTCTGGAGACACTGGTGCACCAGCCAAAAAACCCATTTATCAGACAAAGAAGGGGAAATCAACTAATCGAAATCATAATGGTGCCGCTGCTGTCAAGACAGATGAAAGCGCTGAAGCAAAGGAAACTACCGCTGATTTAGATTTGGAGGAACCGGAAAAGATTGAAGAAGTGGAGTCAGTGCAGATGGAGGACAAAGTTGAACTTCCTGAAGCTGTTGAAGAGGATGCAGTGGAAGAAGATGACGATGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTCAATCTGAATGATAGGGGTGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACTGATTGTCAAAAAAGAGATTAGAAATGTACCTGCTAAAAATGCTGGTGCTACAAGTAAAACTGTTTCGAAGCCCGTGGCTGAAGAAATTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAAGCACGATCCACAACAATCTGCTGTGCCTCCTAAGCCGAGTGAGGGGAACCTCCGATCGCCAATTTGCTGCATCATGGGTCACGTGGACACGGGAAAAACCAAGCTTCTGGACTGTATTCGAGGTACCAATGTTCAAGAAGGTGAGGCCGGTGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTCATAACATACGTGAAAGAACTAAGGAACTGAAAGCAGATGCAACGCTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGCCACGAATCGTTCAATAACTTAAGGTCTCGGGGTTCAGGCCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGGTTGACAGGCTTTATGGCTGGAAAGTATGTCGCAATGCTCCAATTCGTAAAGCCATGTTGCAGCAGTCTAAGGATGTTCTAAATGAGTTTAATATGCGAGTCACTCAGATTGTTACTCAGTTCAAGGAACAAGGTCTAAATACTGAATTGTATTATAAAAACAAGGAAATGGGAGAAACATTCAGCATTGTTCCTACAAGTGCACTAAGTGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAAACTATGACTGAAAAACTTACGTACAGTGAAGAAGTGCAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAACGGCGTTCTTCATGAAGGAGATCAAATTGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGTTCATATATCCATCACAAAGAAATCAAGGCTGCGATGGGCATCAAAATCACTGCCCAGGGACTTGAACATGCTATTGCTGGCGCAAGTTTATATGTGGTGAAGCCTGATGATGATTTGGAATGTATTAAAAAGTCAGCCGTGGAAGACGTGGAGTCAGTCTTGAGCAGGATTGACAGGGGTGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAACATTCCTATCTTACCAAATTGCGTCTTCAACAAGAAGGATCCGATTGTCTTGGGAGTTGACATCCTTGAAGGCATTTTGAAGATTGGAACTCCAATTTGTATTCCTTCCCAAGAGTTCATTGATATTGGCCGCATTGCCTCCATTGAGAATAATCATAAACCTGTTGATTATGCGAAGAAAGGACAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAGCTTGTAAGCCATATTTCGCGGAGATCTATTGATATTCTCAAATCTAATTATCGGGATGACCTGTCTATGGAGGAATGGAAGCTGGTGGTGAAATTGAAGAGTCTTTTCAAGATACAATGA 3588 0.43 MGKKKPSIRDDENPPQQGGGGKSKKKAPIIDDDEYSIGTELSEETAAPAVVDEKPGKKKGKKGNAKSSANDNGDDFDDVDDDVPEIVFAGKKKGKSKKSGGGSVFSAAGGFGLLGDDEDGDKDDDEEEKSELTGEGDGDEDDEPIVFSGKKKKSSKGSKKGGGSLFSALDEIDDGDEESKNEKAEDDDNDEDIGPITFSGKKKKSSKSKKAGTAIPDEDSVSVSESAKGGDENDEDDVSFAFTGKKKSSKKKSGSAAARVSDDIIDAVEAEKPSVGEVSNANVDNGNISKSEEVVGTSKNKKKNKKKGGRTKEEEDDLDKILAELGEAPPPAKPAAPPLQDDKVQPAPEVVSAAGASVEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAGSAPVVETVEEKVEISEPKKIDSKTNKKVPKHVREMQELLARRQEAEERKKREEEEKLRKEEEERQRLEELERQAEEAKRIKKEKEKEKLLRKKLDGKLLTAKQKEEARRLEAMRRQILNSTGGVTLPSGDTGAPAKKPIYQTKKGKSTNRNHNGAAAVKTDESAEAKETTADLDLEEPEKIEEVESVQMEDKVELPEAVEEDAVEEDDDEDEWDAKSWDDVNLNDRGAFADEEVDSEPELIVKKEIRNVPAKNAGATSKTVSKPVAEEIEDRKQAKVVVEDKKKKHDPQQSAVPPKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAHNIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLYGWKVCRNAPIRKAMLQQSKDVLNEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSALSGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLECIKKSAVEDVESVLSRIDRGGEGVCVQASTLGSLEALLEFLKTPEVNIPILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKSNYRDDLSMEEWKLVVKLKSLFKIQ 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05268 1195 CDD IF2_aeIF5B_IV 1068 1161 - -
Trre1g05268 1195 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1021 1071 IPR036925 -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 510 621 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 224 244 - -
Trre1g05268 1195 Gene3D Translation factors 1070 1195 - -
Trre1g05268 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 985 IPR027417 -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 647 693 - -
Trre1g05268 1195 PRINTS GTP-binding elongation factor signature 778 789 IPR000795 GO:0003924|GO:0005525
Trre1g05268 1195 PRINTS GTP-binding elongation factor signature 814 823 IPR000795 GO:0003924|GO:0005525
Trre1g05268 1195 PRINTS GTP-binding elongation factor signature 698 711 IPR000795 GO:0003924|GO:0005525
Trre1g05268 1195 PRINTS GTP-binding elongation factor signature 762 772 IPR000795 GO:0003924|GO:0005525
Trre1g05268 1195 Gene3D - 1042 1069 IPR036925 -
Trre1g05268 1195 FunFam eukaryotic translation initiation factor 5B 917 1036 - -
Trre1g05268 1195 Pfam Elongation factor Tu domain 2 933 1011 IPR004161 GO:0005525
Trre1g05268 1195 MobiDBLite consensus disorder prediction 534 548 - -
Trre1g05268 1195 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 694 910 IPR000795 GO:0003924|GO:0005525
Trre1g05268 1195 Pfam Elongation factor Tu GTP binding domain 698 906 IPR000795 GO:0003924|GO:0005525
Trre1g05268 1195 MobiDBLite consensus disorder prediction 117 142 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 1 476 - -
Trre1g05268 1195 Gene3D - 689 916 IPR027417 -
Trre1g05268 1195 CDD aeIF5B_II 918 1028 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 278 294 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 656 682 - -
Trre1g05268 1195 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 297 1070 IPR015760 -
Trre1g05268 1195 Gene3D Translation factors 917 1035 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 587 608 - -
Trre1g05268 1195 Coils Coil 360 391 - -
Trre1g05268 1195 FunFam Eukaryotic translation initiation factor 5B 1064 1195 - -
Trre1g05268 1195 FunFam Eukaryotic translation initiation factor 5B 688 916 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 358 375 - -
Trre1g05268 1195 Coils Coil 420 484 - -
Trre1g05268 1195 CDD IF2_eIF5B 697 907 - -
Trre1g05268 1195 SUPERFAMILY Translation proteins 1068 1194 IPR009000 -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 401 476 - -
Trre1g05268 1195 MobiDBLite consensus disorder prediction 308 323 - -
Trre1g05268 1195 NCBIfam small GTP-binding protein domain 699 823 IPR005225 GO:0005525
Trre1g05268 1195 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05268 Trre-Chr1 58619484 58627498 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05268 1068 1195 Eukaryotic Initiation Factors Gene Family AT1G76810 86.719 4.29e-66 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05268 K03243 - gmx:100814875 1121.69