Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05267 ATGGAGGACGATGTTGGACCTTCTGAAGCTGTTGAAGAGGATGTTGAGGATGAATGGGATGAAAGAAGCTGGGATGATGTCAATATGAATGATAGGGGTGCATTTGCTGATGAAGAAATTGTGCATGTGAATTCTGGTGCTACGAATAAAACTGTTTCGAAGCCTGCGGTTGAAGAAAATGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAATCACGATCCACAACAGTCTTCTGTGATTTCTAGTCCGAGTGATGGGAACCTCCGGTCGCCAATTTGCTGCATCATGGGTCATGTGGACACTGGAAAAACCAAGCTTCTGGATTGTATTAGAGGTACCAATGTTCAAGGAGGCGAGGCTGGCGGTATCACTCAACAGATTGGCGCAACATACTTTCCTGCTAAGAACATACGCGAAAGAACTAAGGAACTGAAAGTTGATGATGCAACATTGAAAGTTCCCGGTTTACTAGTTATTGATACCCCAGGCCACGAATCGTTCAATAATTTAAGGTCTCGAGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGGTTGACAGACTTTTTGGCTGGAAAACATGTCGTAATGCTCCGATTCGTAAAGCAATGAAGCAGCAGTCTAAGGATGTTAAAAATGAGTTTAATATGAAGGTCACTCAGATCGTTACTCAGTTCAAAGAACAAGGTCTAAATACTGAATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATATGCTATTACTATTGGTTAAATGGACTCAAAGGACCATGATTGAGAAACTTACGTACAGCGAAGAAGTGCAGTGTACCGTATTGGAAGTCAAGGTTATCGAAGGTCATGGAACTACTATTGATGTTGTTTTAGTTAACGGCGTTCTTCATGAAGGAGATCAAATAGTTGGTCCAATTGTTGCCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTCAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCAATGGGCATCAAGATCACTGCTCAGGGACTTGAACATGCTATTGCCGGCGCTAGTTTATATGTAGTGAAGCCTGATGATGATTTGGAGTATATTAAAAAGGCGGCTTTGGAAGACGTGGAGTCGGTCTTGAGCAGGATTGACAGGAGCGGCGAGGGTGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTCGAGTTTTTGAAAACTCCAGAAGTCAACATTCCTGTTAATGCTATAAACATAGGTCCTGTACATAAGAAAGATGTCATTAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCGTTTGATGTCAAAGTCATCCCAGAAGCTAGGGAACTTGCAGATAAATTGGGTGTGAAAATTTTTAGCGCCGATATCATTTATCATTTATTTGATCAATTTAAGGTTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGACGAGGTAGTCTTCCCATGCGTTCTAAAGATCCTACCAAATTATATCTTCAACAAAAAGGATCCGATAATTTTGGGAGTTAATATCGTTGAAGGCACGTTAAAGATTGGGACTCCGATTTGTATTCCTTCCCAAGATTTTATTGATATTGGCCGCATTGCCTCCGTTGAGATTAACAATAAACCGGTTAATCGTGCAATGAAAGGGCAGGAAGTAGCCATTAAGATTGTTGGCTGCAATTCTGAGGAAAAGCAGAAAACGTTTGGGAGGCATTTTGATATCGATGATGAACTTGTAAGCCATATTTCACGGAGGTCTATTGATGTTCTCAATACTAATCATCAGGATGATCTGTCTATGGAGGAACGGAAGCTAGTGGCGACATTGAAGAGACTTTTCAAGATACAATGA 2046 0.4022 MEDDVGPSEAVEEDVEDEWDERSWDDVNMNDRGAFADEEIVHVNSGATNKTVSKPAVEENEDRKQAKVVVEDKKKNHDPQQSSVISSPSDGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQGGEAGGITQQIGATYFPAKNIRERTKELKVDDATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLFGWKTCRNAPIRKAMKQQSKDVKNEFNMKVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVKWTQRTMIEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVGPIVATIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVNAINIGPVHKKDVIKASVMLEKKREYSTILAFDVKVIPEARELADKLGVKIFSADIIYHLFDQFKVYMDNIKEEKKKESADEVVFPCVLKILPNYIFNKKDPIILGVNIVEGTLKIGTPICIPSQDFIDIGRIASVEINNKPVNRAMKGQEVAIKIVGCNSEEKQKTFGRHFDIDDELVSHISRRSIDVLNTNHQDDLSMEERKLVATLKRLFKIQ 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05267 681 CDD IF2_aeIF5B_IV 552 647 - -
Trre1g05267 681 Gene3D - 88 316 IPR027417 -
Trre1g05267 681 Gene3D Translation factors 544 681 - -
Trre1g05267 681 SUPERFAMILY Translation proteins 548 680 IPR009000 -
Trre1g05267 681 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 93 310 IPR000795 GO:0003924|GO:0005525
Trre1g05267 681 FunFam Eukaryotic translation initiation factor 5B 431 537 - -
Trre1g05267 681 MobiDBLite consensus disorder prediction 55 79 - -
Trre1g05267 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 380 IPR027417 -
Trre1g05267 681 FunFam Eukaryotic translation initiation factor 5B 87 316 - -
Trre1g05267 681 FunFam eukaryotic translation initiation factor 5B 317 431 - -
Trre1g05267 681 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 414 543 IPR036925 -
Trre1g05267 681 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g05267 681 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 47 678 IPR015760 -
Trre1g05267 681 Gene3D - 431 537 IPR036925 -
Trre1g05267 681 NCBIfam small GTP-binding protein domain 98 242 IPR005225 GO:0005525
Trre1g05267 681 CDD aeIF5B_II 318 419 - -
Trre1g05267 681 FunFam Eukaryotic translation initiation factor 5B 544 681 - -
Trre1g05267 681 Gene3D Translation factors 317 430 - -
Trre1g05267 681 CDD IF2_eIF5B 96 307 - -
Trre1g05267 681 Pfam Elongation factor Tu GTP binding domain 97 305 IPR000795 GO:0003924|GO:0005525
Trre1g05267 681 Pfam Translation-initiation factor 2 419 530 IPR023115 -
Trre1g05267 681 MobiDBLite consensus disorder prediction 1 89 - -
Trre1g05267 681 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Trre1g05267 681 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Trre1g05267 681 PRINTS GTP-binding elongation factor signature 97 110 IPR000795 GO:0003924|GO:0005525
Trre1g05267 681 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Trre1g05267 681 Pfam Elongation factor Tu domain 2 333 406 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05267 Trre-Chr1 58609400 58612833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05267 2 681 Eukaryotic Initiation Factors Gene Family AT1G76810 70.222 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05267 K03243 - gmx:100814640 1077