Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05266 ATGGAGGACGATGTTGGACCTTCTGAAGCTGTTGAAGAGGATGTTGAGGATGAATGGGATGAAAGAAGCTGGGATGATGTCAATATGAATGATAGGGGTGCATTTGCTGATGAAGAAATTGTGCATGTGAATTCTGGTGCTACGAATAAAACTGTTTCGAAGCCTGCGGTTGAAGAAAATGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAATCACGATCCACAACAGTCTTCTGTGATTTCTAGTCCGAGTGATGGGAACCTCCGGTCGCCAATTTGCTGCATCATGGGTCATGTGGACACTGGAAAAACCAAGCTTCTGGATTGTATTAGAGGTACCAATGTTCAAGGAGGCGAGGCTGGCGGTATCACTCAACAGATTGGCGCAACATACTTTCCTGCTAAGAACATACGCGAAAGAACTAAGGAACTGAAAGTTGATGATGCAACATTGAAAGTTCCCGGTTTACTAGTTATTGATACCCCAGGCCACGAATCGTTCAATAATTTAAGGTCTCGAGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGGTTGACAGACTTTTTGGCTGGAAAACATGTCGTAATGCTCCGATTCGTAAAGCAATGAAGCAGCAGTCTAAGGATGTTAAAAATGAGTTTAATATGAAGGTCACTCAGATCGTTACTCAGTTCAAAGAACAAGGTCTAAATACTGAATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATATGCTATTACTATTGGTTAAATGGACTCAAAGGACCATGATTGAGAAACTTACGTACAGCGAAGAAGTGCAGTGTACCGTATTGGAAGTCAAGGTTATCGAAGGTCATGGAACTACTATTGATGTTGTTTTAGTTAACGGCGTTCTTCATGAAGGAGATCAAATAGTTGTATCTGGAATGCAGGGTCCAATTGTTGCCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTCAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCAATGGGCATCAAGATCACTGCTCAGGGACTTGAACATGCTATTGCCGGCGCTAGTTTATATGTAGTGAAGCCTGATGATGATTTGGAGTATATTAAAAAGGCGGCTTTGGAAGACGTGGAGTCGGTCTTGAGCAGGATTGACAGGAGCGGCGAGGGTGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTCGAGTTTTTGAAAACTCCAGAAGTCAACATTCCTGTTAATGCTATAAACATAGGTCCTGTACATAAGAAAGATGTCATTAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCGTTTGATGTCAAAGTCATCCCAGAAGCTAGGGAACTTGCAGATAAATTGGGTGTGAAAATTTTTAGCGCCGATATCATTTATCATTTATTTGATCAATTTAAGGTTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGACGAGGTAGTCTTCCCATGCGTTCTAAAGATCCTACCAAATTATATCTTCAACAAAAAGGATCCGATAATTTTGGGAGTTAATATCGTTGAAGGCACGTTAAAGATTGGGACTCCGATTTGTATTCCTTCCCAAGATTTTATTGATATTGGCCGCATTGCCTCCGTTGAGATTAACAATAAACCGGTTAATCGTGCAATGAAAGGGCAGGAAGTAGCCATTAAGATTGTTGGCTGCAATTCTGAGGAAAAGCAGAAAACGTTTGGGAGGCATTTTGATATCGATGATGAACTTGTAAGCCATATTTCACGGAGGTCTATTGATGTTCTCAATACTAATCATCAGGATGATCTGTCTATGGAGGAACGGAAGCTAGTGGCGACATTGAAGAGACTTTTCAAGATACAATGA 2061 0.4027 MEDDVGPSEAVEEDVEDEWDERSWDDVNMNDRGAFADEEIVHVNSGATNKTVSKPAVEENEDRKQAKVVVEDKKKNHDPQQSSVISSPSDGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQGGEAGGITQQIGATYFPAKNIRERTKELKVDDATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLFGWKTCRNAPIRKAMKQQSKDVKNEFNMKVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVKWTQRTMIEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVATIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVNAINIGPVHKKDVIKASVMLEKKREYSTILAFDVKVIPEARELADKLGVKIFSADIIYHLFDQFKVYMDNIKEEKKKESADEVVFPCVLKILPNYIFNKKDPIILGVNIVEGTLKIGTPICIPSQDFIDIGRIASVEINNKPVNRAMKGQEVAIKIVGCNSEEKQKTFGRHFDIDDELVSHISRRSIDVLNTNHQDDLSMEERKLVATLKRLFKIQ 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05266 686 FunFam Eukaryotic translation initiation factor 5B 436 542 - -
Trre1g05266 686 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 419 548 IPR036925 -
Trre1g05266 686 FunFam Eukaryotic translation initiation factor 5B 549 686 - -
Trre1g05266 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 385 IPR027417 -
Trre1g05266 686 FunFam eukaryotic translation initiation factor 5B 317 436 - -
Trre1g05266 686 NCBIfam small GTP-binding protein domain 98 241 IPR005225 GO:0005525
Trre1g05266 686 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 93 310 IPR000795 GO:0003924|GO:0005525
Trre1g05266 686 MobiDBLite consensus disorder prediction 55 79 - -
Trre1g05266 686 Pfam Translation-initiation factor 2 424 535 IPR023115 -
Trre1g05266 686 CDD IF2_aeIF5B_IV 557 652 - -
Trre1g05266 686 FunFam Eukaryotic translation initiation factor 5B 87 316 - -
Trre1g05266 686 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g05266 686 Pfam Elongation factor Tu domain 2 333 411 IPR004161 GO:0005525
Trre1g05266 686 CDD aeIF5B_II 318 424 - -
Trre1g05266 686 Gene3D - 436 542 IPR036925 -
Trre1g05266 686 SUPERFAMILY Translation proteins 553 685 IPR009000 -
Trre1g05266 686 Gene3D - 88 316 IPR027417 -
Trre1g05266 686 PRINTS GTP-binding elongation factor signature 97 110 IPR000795 GO:0003924|GO:0005525
Trre1g05266 686 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Trre1g05266 686 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Trre1g05266 686 PRINTS GTP-binding elongation factor signature 214 223 IPR000795 GO:0003924|GO:0005525
Trre1g05266 686 Gene3D Translation factors 549 686 - -
Trre1g05266 686 Gene3D Translation factors 317 435 - -
Trre1g05266 686 CDD IF2_eIF5B 96 307 - -
Trre1g05266 686 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 47 683 IPR015760 -
Trre1g05266 686 Pfam Elongation factor Tu GTP binding domain 97 305 IPR000795 GO:0003924|GO:0005525
Trre1g05266 686 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05266 Trre-Chr1 58609400 58612833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05266 2 686 Eukaryotic Initiation Factors Gene Family AT1G76810 70.637 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05266 K03243 - gmx:100814640 1090.49