Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05250 ATGGATATGAATTTGTCACAAGGTGGAATACTTCAAGGTGGTGTTGGTAATTCTTTTGGTGGATTTGATTTACCTGGATCAATTCAGGTTCATCATCAAGCACACCATCCTCACACTATTCACCAACATCAACCTCATCCTCATCCTCATCCTCATCCGCGTCAAGGGTCATCGGTTCATGACGGTTTTCCACTCACAATGGGAAGTTTGAAGAACTGTGATCAAACTATTTCATTGACTGATTATAGTAAGGGAGAGAGAAGCAAAAACTCGACGAGTGAGGATGATGAGCCAAGTTTTAATGAGGATGGTTTTGATGGTCAACATGAAGGGGGTAGAGGTAAAAAGGGATCATCGTTGCCGTGGCAGCGTGTGAAGTGGACTGATAAGATGGTGACGCTTATGATAACAGCTGTTTCTTATATAGGTGAGGATATAACTATTGACGGTGGAGGTGGAAATGGAAGAAGGAGATTTGCGGTTTTACAGAAAAAGGGTAAGTGGAAATCTGTATCGAAAGTCATGGCTGAAAGAGGTTATAATGTTTCACCTCAACAATGTGAGGATAAATTCAATGATCTTAATAAAAGGTATAAGAAGCTTAATGATATGTTAGGGAGAGGGACTTCTTGTCAGGTTGTTGAAAATCCTTCACTTTTGGATGTAATAGATTTTCTTTCCGAGAAAGAAAAAGACGATGTTCGAAAAATATTAAGCTCGAAACACTTGTTTTATGAAGAGATGTGTTCTTATCATAATGGTAATAGGTTGCATTTGCCGCATGATCCTGCATTGCAATGTTCAATGCAGTTAGCTCTTCGAAATAGGGATGATCATGATAATGACGATATCAAAAGGTCCCATCTTGACGATCACGATGAAGATGAACAAGATGTAGAAATCGATGAACGTGATGATTTTAAAGATAATTGTGCTTCTCGTGGTGATAGCAAGAGAATATTTGGGCGGTTAGGTGGATCTACGAAGAAATTGAAACAAAACCAATGCCAAGAAGATGCTAATGCTTTTGGTCATTCTTCAAATTGTCAAGATCAATTCAACAAAGGTTCGTATCCCCGTGAACAATCGGTCCATTCTGACGGTAATAGAGTTATACCAGAAAACATGAGGGCAGCATGGTTACAGAAGCAATGGGTTGACTCTCGCCAAGCTCAGTTAGAAGAGCAAAAGCTACAAATTCAGGTTGAAATGTTGGAATTAGAGAAACAAAGATTGAAGTGGCAGAGGTTTAGTAAGAAAAAGGACCAAGAGTTGGAGAAGCTGAGTCTAGAAAACGAAAGAATGAAGCTTCAAAATGAACGTATGGCTTTAGAACTGAAACGAAAGGAAATGGATATTGGCCTTAACTAG 1371 0.3917 MDMNLSQGGILQGGVGNSFGGFDLPGSIQVHHQAHHPHTIHQHQPHPHPHPHPRQGSSVHDGFPLTMGSLKNCDQTISLTDYSKGERSKNSTSEDDEPSFNEDGFDGQHEGGRGKKGSSLPWQRVKWTDKMVTLMITAVSYIGEDITIDGGGGNGRRRFAVLQKKGKWKSVSKVMAERGYNVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPSLLDVIDFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQCSMQLALRNRDDHDNDDIKRSHLDDHDEDEQDVEIDERDDFKDNCASRGDSKRIFGRLGGSTKKLKQNQCQEDANAFGHSSNCQDQFNKGSYPREQSVHSDGNRVIPENMRAAWLQKQWVDSRQAQLEEQKLQIQVEMLELEKQRLKWQRFSKKKDQELEKLSLENERMKLQNERMALELKRKEMDIGLN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05250 456 MobiDBLite consensus disorder prediction 80 120 - -
Trre1g05250 456 MobiDBLite consensus disorder prediction 22 67 - -
Trre1g05250 456 Coils Coil 388 415 - -
Trre1g05250 456 MobiDBLite consensus disorder prediction 278 293 - -
Trre1g05250 456 MobiDBLite consensus disorder prediction 87 113 - -
Trre1g05250 456 Coils Coil 418 452 - -
Trre1g05250 456 PANTHER F16F4.11 PROTEIN-RELATED 5 453 - -
Trre1g05250 456 MobiDBLite consensus disorder prediction 278 308 - -
Trre1g05250 456 Pfam Myb/SANT-like DNA-binding domain 124 251 IPR044822 -
Trre1g05250 456 Gene3D - 127 200 - -
Trre1g05250 456 MobiDBLite consensus disorder prediction 34 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05250 Trre-Chr1 58528775 58530145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g05250 Myb_DNA-bind_4 1.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05250 - - tpra:123906894 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00999 11 9101149 9102489 Trre1g05250 1 58528775 58530145 PCT