Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05249 ATGCTGGGTGACACAGCTGTTTTGGGTGGCGGTGGAGATGCAGCACCACCCAACATGACGGCAGAAGCGGCGGTTACTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAAGTAGAATTGATGAAGGTGAACGTAGCTTCGGCGGTAACCGGTGGCCGCGACAAGAAACTATGGCTCTTTTAAGGATACGATCGGATATGGACACAACGTTTCGAGATGCAAGTGTTAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTGCAAAGAAATGCAAGGAGAAATTTGAAAATGTTTATAAATATCACAAGAGAACAAAAGATGGTCGCGGTGGAAAATCCGATGGTAAAACTTATCGATTTTTTGATCAATTAGAAGCTCTTGATCATTTTCATAATCCCCCTTCTGTGCATCCTCAACCTCAAAATCAACCCCAAATTCCATCGAAATCACCACAAATTTCTGCACCAACAACGACTCCACCACAAGTTGTTACAAGTCCAACAATTTCAATCCCAATTTCAGAAACAACAACAATTCCAATGTCATTGCGGCCGGTGGTTAACACCACTCTTAGTATCCCCAATGCAAGTGTTCCATCAATTCCCATGCCTCAAAACAATATTGTAACTGCCCAATCAATTATGAATATGAACCAAACAATCCCATCCAATCCTACAATGAGTTTCCAACCATCAACGACAAACACTGCTACCATCAACCCTCTTCCATCTTTCCCTAACATGGCGAGTTCTTACTCGACCTCTTCTGATGACTCAATGGAAGAAGGATCGCGAAAGAGGAAGCGGAAATGGACAAACTTTTTTGAGAGGCTAATGAAGGAAGTGATTGAGAAACAAGAGGATTTGCATAAGAGATTCTTGGAAGCTATTGAGAAACGCGAACATGACCGAATGACTAAAGAAGAAGCTTGGAGAGAACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATTCTTGCACAAGAAAGATCTATATCTGCAGCAAAAGATGCTGCAATTATGTCTTTCTTGCAAAAAATCGCAGAACAACAAAATCTAGGACAAGCATTGAATAACATCAACATTGCACAATCACCGCCACCACAACAGACAAAGCAGCAGCAACCACAAAAACAACGAAGTGCAACACCAACACCATTACCGCCACCAACACCAATATCTGTGGTACAAGCCCACCCACCACCATCTTCTCAACTACCACAAGTAACTAAACCGGCCCCACCAATGGTCTCACAACAACAACAATCGGTGACGAATATGGAAATAGTAAAAGTTGATACTAATGGTGAGAATTTGATGGGAGTGAGTCCGTCAAGGTGGCCAAAAGTGGAAGTTCAAGCACTGATAAATCTCAGAACGAGCATGGATAATAAATACCAAGAGAATGTTCCAAAAGGCCCTCTCTGGGAGGAGATATCTTCAGCTATGAAAAACCTTGGATACAATAGGAATGCTAAAAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAAAGTAACAAGAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAATTGGATGCTTTGTATAAGGAGAAAGGCAAGGGAGACAATTCTGGTGGTAGTGGTGGTTCGAGCCAGGTGGTGAAGACGGATAACATGACAACACCGTTAATGGTTCGGCCGGAGCAACAATGGCCACCTCAGCAGGAAGAAAACCGAATGAATCAAAACCATGGAGAGGAAGAAGATGATATGGATGAAGACGATAAGGAAGGAGAGGATGAAAATGGAGAAGATATGGATGAAAGTGGTAGTGGTAGTGGTGGTGGTGGTAGTAACTTTGAGGTAGTGGCAAGCAAACCTACGGTGGATGCATCAGCTTGA 1932 0.4265 MLGDTAVLGGGGDAAPPNMTAEAAVTGGGVGSNSESDVERSRIDEGERSFGGNRWPRQETMALLRIRSDMDTTFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNPPSVHPQPQNQPQIPSKSPQISAPTTTPPQVVTSPTISIPISETTTIPMSLRPVVNTTLSIPNASVPSIPMPQNNIVTAQSIMNMNQTIPSNPTMSFQPSTTNTATINPLPSFPNMASSYSTSSDDSMEEGSRKRKRKWTNFFERLMKEVIEKQEDLHKRFLEAIEKREHDRMTKEEAWREQEMQRINREREILAQERSISAAKDAAIMSFLQKIAEQQNLGQALNNINIAQSPPPQQTKQQQPQKQRSATPTPLPPPTPISVVQAHPPPSSQLPQVTKPAPPMVSQQQQSVTNMEIVKVDTNGENLMGVSPSRWPKVEVQALINLRTSMDNKYQENVPKGPLWEEISSAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGDNSGGSGGSSQVVKTDNMTTPLMVRPEQQWPPQQEENRMNQNHGEEEDDMDEDDKEGEDENGEDMDESGSGSGGGGSNFEVVASKPTVDASA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05249 643 MobiDBLite consensus disorder prediction 373 393 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 554 589 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 141 181 - -
Trre1g05249 643 ProSiteProfiles Myb-like domain profile. 457 515 IPR001005 -
Trre1g05249 643 MobiDBLite consensus disorder prediction 394 409 - -
Trre1g05249 643 CDD GT1 53 118 - -
Trre1g05249 643 FunFam Trihelix transcription factor GT-2 459 520 - -
Trre1g05249 643 ProSiteProfiles Myb-like domain profile. 53 111 IPR001005 -
Trre1g05249 643 PANTHER FI21293P1 29 599 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 373 434 - -
Trre1g05249 643 Pfam Myb/SANT-like DNA-binding domain 457 544 IPR044822 -
Trre1g05249 643 Pfam Myb/SANT-like DNA-binding domain 53 139 IPR044822 -
Trre1g05249 643 MobiDBLite consensus disorder prediction 597 617 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 37 52 - -
Trre1g05249 643 FunFam Trihelix transcription factor GT-2 55 116 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 410 434 - -
Trre1g05249 643 Gene3D - 459 520 - -
Trre1g05249 643 Gene3D - 55 116 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 1 55 - -
Trre1g05249 643 SMART sant 51 113 IPR001005 -
Trre1g05249 643 SMART sant 455 517 IPR001005 -
Trre1g05249 643 CDD GT1 457 522 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 158 181 - -
Trre1g05249 643 MobiDBLite consensus disorder prediction 547 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05249 Trre-Chr1 58494124 58497021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05249 51 586 Trihelix Transcription Factor Family AT1G76890 44.326 8.65e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g05249 Myb_DNA-bind_4 3.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05249 - - psat:127090944 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01000 11 9124039 9127187 Trre1g05249 1 58494124 58497021 PCT