Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05248 ATGGATAATTCTACCGGTGAGAATATTGTTCCATCCGTGGTGGCGCAAAACGGCGCCAACGGTGGTCATGAAGAGAAAGAAAGAGAGATTATTGATGAAGATGATAAGATAAATATGAATGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCACTTTTGAAGATAAGATCGGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCCCTATGGGATGAAGTTTCAAGAAAACTAGGTGAACTTGGTTATCACCGAAGCTCAAAAAAATGCAAAGAGAAATTTGAGAATGTATACAAATATCACAAAAGGACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAATTCACACTCTCTTCTTACTCTCCAAAACCACAACCAAATAATCACACACCCTCATTACCAACAATAAAGCCTAATGAAACCACAAATCCAATATCACATGTAACCAATACTACTATTCCATCCACAAACCCTACTGCACTCATTTTTCCTTCACCACCATCAACCAATGCCACAACCAACCCTAACAACAACAATAATGTTCCATATTCTTTGCCAAACATGAACAACCTATTCTCAAATACAACTAACTCAACTTCATCTTCCACGGCTTCAGACGAAGACTTGGAAGAGAAGTATAGGAAGAAGAGAAAATGGAAGGACTATTTCAGGAGATTGACAAGACAAGTGTTGGCAAAACAAGAGGAAATGCAAAAGAAGTTTCTAGAAGCCATAGATAAACGCGAAAAAGAACACATGGCTCAACAAGACGCTTTGAGAATTCAAGAAATAAATCGAATCAATAAAGAACACGAACTTCTTGTTCAAGAAAGATCATCCGCAGCTCAAAAAAATGCCGCCATCATTGCCTTTCTCCAAAAATTGTCTGGACAACCACCACTACAACCACCGCCACCACCACCACCACCACCAACAGTGCCAGAGATGTCTCCGGTTCCGGTATCACAAGTACAAACACACCAACTAGTGATACCAAACAACAACATTGTTGAAATTAAGAATATGAATAATGGTCACAAAAGTGATTGTGGTGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCACTTATAAGGATAAGAACAAGTCTTGAACCAAAATATCAAGAAAATGGACCAAAAGCACCATTGTGGGAAGATATATCAGCTGGAATGAAGAAACTTGGTTACAATAGAAATGCAAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTACTACAAGAAGATGAAGGAAAGTAACAAACAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTTGGTTCTAATTCGTTTCATAGTATAAAGTCAAGTGAAATGATGGAGCCATTAATGGTGCAACCAGAACAACAATGGAGACCACCAACTCAAGATGAAGAAGCTAATGTGGTGAAGAAGAATATTAATGAAGCAAAAGAAGATGAAGATGATGGTGATGTTGATGATGAGGATGAAAACATGGATGACTATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTCACAACAAATAAACTTTCTTCAATGGATACAGTTGAATGA 1710 0.3789 MDNSTGENIVPSVVAQNGANGGHEEKEREIIDEDDKINMNGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWDEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQFTLSSYSPKPQPNNHTPSLPTIKPNETTNPISHVTNTTIPSTNPTALIFPSPPSTNATTNPNNNNNVPYSLPNMNNLFSNTTNSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHMAQQDALRIQEINRINKEHELLVQERSSAAQKNAAIIAFLQKLSGQPPLQPPPPPPPPPTVPEMSPVPVSQVQTHQLVIPNNNIVEIKNMNNGHKSDCGVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKKLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQDEEANVVKKNINEAKEDEDDGDVDDEDENMDDYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05248 569 MobiDBLite consensus disorder prediction 316 338 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 496 569 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 1 15 - -
Trre1g05248 569 Gene3D - 378 439 - -
Trre1g05248 569 Gene3D - 47 108 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 521 545 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 138 159 - -
Trre1g05248 569 FunFam Trihelix transcription factor GT-2 378 439 - -
Trre1g05248 569 CDD GT1 45 110 - -
Trre1g05248 569 PANTHER FI21293P1 18 514 - -
Trre1g05248 569 FunFam Trihelix transcription factor GT-2 47 108 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 1 46 - -
Trre1g05248 569 CDD GT1 376 441 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 506 520 - -
Trre1g05248 569 MobiDBLite consensus disorder prediction 21 36 - -
Trre1g05248 569 SMART sant 374 436 IPR001005 -
Trre1g05248 569 SMART sant 43 105 IPR001005 -
Trre1g05248 569 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
Trre1g05248 569 MobiDBLite consensus disorder prediction 318 337 - -
Trre1g05248 569 ProSiteProfiles Myb-like domain profile. 376 434 IPR001005 -
Trre1g05248 569 Pfam Myb/SANT-like DNA-binding domain 376 463 IPR044822 -
Trre1g05248 569 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Trre1g05248 569 MobiDBLite consensus disorder prediction 553 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05248 Trre-Chr1 58457921 58460432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05248 41 498 Trihelix Transcription Factor Family AT1G76890 50.000 5.68e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g05248 Myb_DNA-bind_4 8.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05248 - - gsj:114370603 632.098