Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05247 ATGCAGCTTGGTGATGCAACAATAGTGATGGATAATTCTACCGGTGAGAATATTGTTCCATCCGTGGTGGCGCAAAACGGCGCCAACGGTGGTCATGAAGAGAAAGAAAGAGAGATTATTGATGAAGATGATAAGATAAATATGAATGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCACTTTTGAAGATAAGATCGGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCCCTATGGGATGAAGTTTCAAGAAAACTAGGTGAACTTGGTTATCACCGAAGCTCAAAAAAATGCAAAGAGAAATTTGAGAATGTATACAAATATCACAAAAGGACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAATTCACACTCTCTTCTTACTCTCCAAAACCACAACCAAATAATCACACACCCTCATTACCAACAATAAAGCCTAATGAAACCACAAATCCAATATCACATGTAACCAATACTACTATTCCATCCACAAACCCTACTGCACTCATTTTTCCTTCACCACCATCAACCAATGCCACAACCAACCCTAACAACAACAATAATGTTCCATATTCTTTGCCAAACATGAACAACCTATTCTCAAATACAACTAACTCAACTTCATCTTCCACGGCTTCAGACGAAGACTTGGAAGAGAAGTATAGGAAGAAGAGAAAATGGAAGGACTATTTCAGGAGATTGACAAGACAAGTGTTGGCAAAACAAGAGGAAATGCAAAAGAAGTTTCTAGAAGCCATAGATAAACGCGAAAAAGAACACATGGCTCAACAAGACGCTTTGAGAATTCAAGAAATAAATCGAATCAATAAAGAACACGAACTTCTTGTTCAAGAAAGATCATCCGCAGCTCAAAAAAATGCCGCCATCATTGCCTTTCTCCAAAAATTGTCTGGACAACCACCACTACAACCACCGCCACCACCACCACCACCACCAACAGTGCCAGAGATGTCTCCGGTTCCGGTATCACAAGTACAAACACACCAACTAGTGATACCAAACAACAACATTGTTGAAATTAAGAATATGAATAATGGTCACAAAAGTGATTGTGGTGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCACTTATAAGGATAAGAACAAGTCTTGAACCAAAATATCAAGAAAATGGACCAAAAGCACCATTGTGGGAAGATATATCAGCTGGAATGAAGAAACTTGGTTACAATAGAAATGCAAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTACTACAAGAAGATGAAGGAAAGTAACAAACAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTTGGTTCTAATTCGTTTCATAGTATAAAGTCAAGTGAAATGATGGAGCCATTAATGGTGCAACCAGAACAACAATGGAGACCACCAACTCAAGATGAAGAAGCTAATGTGGTGAAGAAGAATATTAATGAAGCAAAAGAAGATGAAGATGATGGTGATGTTGATGATGAGGATGAAAACATGGATGACTATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTCACAACAAATAAACTTTCTTCAATGGATACAGTTGAATGA 1737 0.38 MQLGDATIVMDNSTGENIVPSVVAQNGANGGHEEKEREIIDEDDKINMNGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWDEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQFTLSSYSPKPQPNNHTPSLPTIKPNETTNPISHVTNTTIPSTNPTALIFPSPPSTNATTNPNNNNNVPYSLPNMNNLFSNTTNSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHMAQQDALRIQEINRINKEHELLVQERSSAAQKNAAIIAFLQKLSGQPPLQPPPPPPPPPTVPEMSPVPVSQVQTHQLVIPNNNIVEIKNMNNGHKSDCGVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKKLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQDEEANVVKKNINEAKEDEDDGDVDDEDENMDDYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05247 578 SMART sant 52 114 IPR001005 -
Trre1g05247 578 SMART sant 383 445 IPR001005 -
Trre1g05247 578 MobiDBLite consensus disorder prediction 147 169 - -
Trre1g05247 578 MobiDBLite consensus disorder prediction 327 346 - -
Trre1g05247 578 Gene3D - 56 117 - -
Trre1g05247 578 Gene3D - 387 448 - -
Trre1g05247 578 MobiDBLite consensus disorder prediction 325 347 - -
Trre1g05247 578 MobiDBLite consensus disorder prediction 515 529 - -
Trre1g05247 578 ProSiteProfiles Myb-like domain profile. 385 443 IPR001005 -
Trre1g05247 578 PANTHER FI21293P1 27 523 - -
Trre1g05247 578 CDD GT1 54 119 - -
Trre1g05247 578 MobiDBLite consensus disorder prediction 562 578 - -
Trre1g05247 578 ProSiteProfiles Myb-like domain profile. 54 112 IPR001005 -
Trre1g05247 578 FunFam Trihelix transcription factor GT-2 56 117 - -
Trre1g05247 578 Pfam Myb/SANT-like DNA-binding domain 54 140 IPR044822 -
Trre1g05247 578 Pfam Myb/SANT-like DNA-binding domain 385 472 IPR044822 -
Trre1g05247 578 FunFam Trihelix transcription factor GT-2 387 448 - -
Trre1g05247 578 CDD GT1 385 450 - -
Trre1g05247 578 MobiDBLite consensus disorder prediction 505 578 - -
Trre1g05247 578 MobiDBLite consensus disorder prediction 530 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05247 Trre-Chr1 58457894 58460432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05247 50 507 Trihelix Transcription Factor Family AT1G76890 50.000 7.79e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre1g05247 Myb_DNA-bind_4 8.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05247 - - gsj:114370603 642.499