Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05235 ATGGCTTCCTCCAAGCTCATGCCTTCTTCAAATTCAATCAATTCCGATCAACAACCTTCATCACCATCTTCCAAATCTCATTTCACCACAACCAATTTCCTCCCTATTTCCGACAATTCAACTTTCCTCAACGATCAACCTTCTCTCGCCGACGCCGTCGCTACTCCCAGAACCGTCGATGATGTCTGGCGAGAGATCGTTGCTGGAGATAACAGAGAGTGTAAGGAAGAAATCTCCGACGAGATGATGACACTGGAAGATTTTCTTGTGAAAGCTGGTGCTGTTGATGATGAAGAAGACGGTGATGATGATGTTAAGATGACGATACCGTTGTCGGAGACGCTTAGTGGTAGTGGTATGTTCTCGTTGGATCCTAATTTTCAGGGAATTGAGAGTGTTGAAGGGTCGGTGATAGGGTTTGGGAATGGAAATGGGAATGGGAATGGAGTAGAGGTGGTTGAAGGTGGTGGTAGGGGGAAGAGAGGACGACCTGTTTTGGAGCAGTTGGATAAGGCTGCTCAGCAGAGACAGAGGAGAATGATCAAAAATAGAGAATCTGCTGCTAGGTCTAGGGAACGTAAGCAGGCTTATCAAGTTGAATTGGAGACTTTGGCGGTGAAGCTAGAGGAGGAAAATTACAAGTTGTTGAAGGAAAAGGCTGAAAGGAAAAAGGAGAGGTTCAAGCAGCTTATGGAAAATGTAATTCCTGTTGTGGAGCAGCGTAGGCCGCCACGGTTACTCCGTAGGGTTCGCTCCTTGCAGTGGTAG 768 0.4674 MASSKLMPSSNSINSDQQPSSPSSKSHFTTTNFLPISDNSTFLNDQPSLADAVATPRTVDDVWREIVAGDNRECKEEISDEMMTLEDFLVKAGAVDDEEDGDDDVKMTIPLSETLSGSGMFSLDPNFQGIESVEGSVIGFGNGNGNGNGVEVVEGGGRGKRGRPVLEQLDKAAQQRQRRMIKNRESAARSRERKQAYQVELETLAVKLEEENYKLLKEKAERKKERFKQLMENVIPVVEQRRPPRLLRRVRSLQW 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05235 255 CDD bZIP_plant_BZIP46 175 221 - -
Trre1g05235 255 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Trre1g05235 255 Pfam bZIP transcription factor 173 231 IPR004827 GO:0003700|GO:0006355
Trre1g05235 255 Gene3D - 173 226 - -
Trre1g05235 255 PRINTS cAMP response element binding (CREB) protein signature 188 208 - -
Trre1g05235 255 PRINTS cAMP response element binding (CREB) protein signature 208 225 - -
Trre1g05235 255 PRINTS cAMP response element binding (CREB) protein signature 106 121 - -
Trre1g05235 255 PRINTS cAMP response element binding (CREB) protein signature 170 186 - -
Trre1g05235 255 Coils Coil 205 233 - -
Trre1g05235 255 SUPERFAMILY Leucine zipper domain 176 223 IPR046347 GO:0003700|GO:0006355
Trre1g05235 255 SMART brlzneu 171 235 IPR004827 GO:0003700|GO:0006355
Trre1g05235 255 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g05235 255 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 225 IPR004827 GO:0003700|GO:0006355
Trre1g05235 255 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 23 241 IPR043452 GO:0003700|GO:0045893
Trre1g05235 255 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 173 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05235 Trre-Chr1 58317753 58320359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05235 57 255 bZIP Transcription Factor Family AT5G44080 56.373 1.10e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g05235 bZIP_1 2.2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05235 K14432 - gmx:100808917 213.001