Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05233 ATGTCTCACAGGAAGTTCGAGCACCCAAGACATGGTTCGTTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCCAAGGATGACCCAACCAAGCCACCCAAGCTTACCGCCTTCTTGGGATACAAGGCTGGTATGACCCACATTGTGAGAGAAGTTGAGAAACCAGGATCCAAGCTTCACAAAAAGGAGACTTGTGAGCCAGTCACAATTATTGAGACCCCTCCCATGGTTATTGTCGGTGTTGTGGGTTATGTGAAAACTCCTCGCGGTCTTCGTACATTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGGAAGAAAAACATTCAGACCCAGCTTGAGAAACTGAAGAAATATTCAACTGTTATCCGTGTGTTGGCTCACACTCAGATCAGAAAAATGAAGGGATTGAAGCAGAAGAAGGCCCATATCATGGAGATTCAGGTTAATGGCGGTACTATTGCACAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAACAGGTTCCTATTGATGCAGTCTTCCAGAAGGATGAAATGATTGACGTCATTGGAGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCTGCTAGAGTTTCTTTCACTGTTGCTAGGGCTGGTCAGAACGGTTACCATCACAGAACTGAGCTGAACAAGAAAATTTACAAGCTCGGCAAAACTGGAGAAGAGACCCATGATGCCCAGACTGAGTTTGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCCCACTATGGTATTGTGAAGGAGGATTATCTGATGATCAAGGGAGGCTGTGTCGGTCCCAAGAAGAGGGTTGTTACACTGCGCCAGTCACTTCTCAAGCAGACTTCTCGTCTTGCATTGGAGGATATCAAACTCAAGTTTATCGATACATCTTCCAAGTTTGGCCATGGTCGTTTCCAGACAACACAAGAGAAGCAAAAGTTCTACGGACGCCTCAAAGCTTAA 1170 0.4615 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYSTVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05233 389 FunFam Ribosomal protein L3 265 389 - -
Trre1g05233 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Trre1g05233 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Trre1g05233 389 FunFam 60S ribosomal protein L3 1 74 - -
Trre1g05233 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trre1g05233 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trre1g05233 389 FunFam 60S ribosomal protein L3 44 160 - -
Trre1g05233 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Trre1g05233 389 MobiDBLite consensus disorder prediction 1 36 - -
Trre1g05233 389 Gene3D - 83 207 - -
Trre1g05233 389 FunFam 60S ribosomal protein L3 83 207 - -
Trre1g05233 389 FunFam 60S ribosomal protein L3 226 274 - -
Trre1g05233 389 Gene3D Translation factors 44 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05233 Trre-Chr1 58295374 58298307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05233 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.080 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05233 K02925 - gmx:100819132 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05233 1 58295374 58298307 Trre1g05233 1 58295374 58298307 ECH