Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05225 ATGGATCCTTATGATGAAGACTTGCCTCATTACATTCATATCAATCAGAATGAATTTTATATGCGAAGGCATAAGAAACAGAAGGAGGAGGATATTGCTATTTGTGAATGTAGGTATGATGAAGATGACCCTGACAGTGCCTGTGGAGATGGGTGTTTAAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCCCTTGTGGTATTCTTTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGGGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGAAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAACGTAGATCCCATGCTTATGAAATTGCAGGTCTCAAGGATGCATTTATCATTAGTCTTAATGCGTCTGAATCCATTGATGCAAGTAGAAAAGGAAGCGTTGCCAGATTTATCAATCATTCATGTCAGCCAAATTGTGAGACAAGAAAATGGAATGTCTTAGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCGAAGGTTCGTTGCCTCTGTGGTGCGCTCAAATGTTCTGGATTCCTTGGAGCAAAGTCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCTGAGGATGAACTGACGTCAAATGTTGATGGACAAAGTGACCAATCCATGGCTATTGTACTTAAAGCTGAAGAACTATCAGACTCCACTGTTTTAGATATTCAACCACTCAATTCTTCAATTGAGGTCAAGGATTTAGGTATTGGAAAAATGAAAACTGAAATATTAAGCGAGGACATGAAGTTGTACTCCCAAGATACTGAACAGGACCTTTCACAAAAGAATGCAATGATATCGCGCATTCGAAGTAATGCTGCAGGAAGAAACTATCGCATTGGACCTAGGTCCATCACTACCAAAAGATCAAAGGCAGGGAGAAGGTTTAAAAATCACACACAGAAGAAAATTGATGCAAAGTATGCAGCTAGCCTTTTGACATCAAAGGTAGCACAAGAGGAGATCTTAGATTATGAGAAAAGAAAAGACGACGCCACAGATGCCCTTGATTCTTTATACAATGAAATACGGCCTGCTATCGAAGAACACGAGAGGGACACCCAAGACAGCGTATCTACAACAGTAGCAGAGAAGTGGATACAGGCTTGCTGTCTAAAACTGAAGGCCGAGTTTGATCTTTACTCGTCAATCATTATGAATGTTGGCTGTAATACTGAAAGAGCACCCAGCCAAGCAAAATCTACCGAAGCAGACAACGAAAACAAAATTAAGTTGTTGACAGCAGATTGA 1446 0.3942 MDPYDEDLPHYIHINQNEFYMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGHCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKEGQFVIEYCGEVISCKEAKRRSHAYEIAGLKDAFIISLNASESIDASRKGSVARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVDGQSDQSMAIVLKAEELSDSTVLDIQPLNSSIEVKDLGIGKMKTEILSEDMKLYSQDTEQDLSQKNAMISRIRSNAAGRNYRIGPRSITTKRSKAGRRFKNHTQKKIDAKYAASLLTSKVAQEEILDYEKRKDDATDALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIIMNVGCNTERAPSQAKSTEADNENKIKLLTAD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05225 481 SMART set_7 83 206 IPR001214 GO:0005515
Trre1g05225 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Trre1g05225 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Trre1g05225 481 SUPERFAMILY SET domain 8 220 IPR046341 -
Trre1g05225 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Trre1g05225 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Trre1g05225 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Trre1g05225 481 Coils Coil 380 407 - -
Trre1g05225 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Trre1g05225 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Trre1g05225 481 Gene3D SET domain 2 235 IPR046341 -
Trre1g05225 481 PANTHER SET DOMAIN PROTEINS 8 444 - -
Trre1g05225 481 MobiDBLite consensus disorder prediction 459 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05225 Trre-Chr1 58241545 58245796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05225 66 222 C2H2 Transcription Factor Family AT2G23740 34.444 2.52e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g05225 SET 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05225 - - gmx:100775294 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05225 1 58241545 58245796 Trre1g05225 1 58241545 58245796 ECH