Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05224 ATGGATCACGGGTTCCAAGCCATCTTAGCTGCAGTTGCTAGCTTCATCGTCGTCACAGTCATATTCGCAGTCATCATTCTCATCTGTCAGTACCGGAAAGCCGTTCAAATCCGCCGTAACAACCAGATCCGAACCCGACCGCTTCGAAACCCGAACCATTACCCAACCAGCTCCAACTCCTTCCCGGTGGACGCTACCTGGTCATGGGATCCCAATCTCAAAATCTCCATGGAAGAACTCTCCCGCGCCACCAATAACTTCTCACCATACCGAGTCGTCGGTGACGGCAGCTTCGGCCTAGTCTACAAAGCTCGTCTCTCCACCGGCATCGTCGTCGCCGTAAAAAAACTCTCCCCCGATGCTTTTCAAGGATTCCGCGAATTCGCGGCGGAGATGGAAACTCTAAGCAAACTTAGCCACCGTAACATCGTGAAAATCCTCGGGTATTGGGCTTCTGGACCTGAACGGTTACTCGTTTACGAGTACATCGAAAAAGGAAACCTCGATCAATGGCTTCACGAACCTTCTTCTCCAACGCTCCCAAACGACGACGTTTTCTCCACTGATATTATTCGTTCTCCTTTGTCTTGGGAAACAAGAGTCAACATAATTCGTGGTGTAGCTCATGGGCTTTGTTATTTACATGGGCTTCAGAAGCCCATTATTCATCGAGATATCAAAGCTAGCAATGTCTTATTGGACTCTGAATTTCAGGCCCATATTGCTGATTTTGGGCTAGCACGTAGGATGGATAAATCGCATTCGCATGTGTCAACGCAGGTTGCGGGTACTATTGGTTACATGCCGCCGGAGTATAGAGATGGGTCTAACGTAGCAAACCCGAAAGTTGATGTTTATAGTTTTGGAGTGTTGATGATTGAAACTGTGTCGGGGCATAGGCCGAATTTGGCTGTTAAATTGGAGGGAAATGATATTGGGCTTGTTAATTGGGCCAGGAAGATGAAGGAAAGGAACACCGAGATGGAAATGCTGGATGTAAATGTTCCAAGAGAAGAAGGGTTGAAGGAGGAGAGTGTTAGGGAGTATGTACATATTGCTTGTATGTGCACTGGTGAGTTACAGAAAGATAGGCCTGAAATGCCAGAGGTTGTCAAATTATTGGACTCAATGCCCCTATAA 1140 0.4728 MDHGFQAILAAVASFIVVTVIFAVIILICQYRKAVQIRRNNQIRTRPLRNPNHYPTSSNSFPVDATWSWDPNLKISMEELSRATNNFSPYRVVGDGSFGLVYKARLSTGIVVAVKKLSPDAFQGFREFAAEMETLSKLSHRNIVKILGYWASGPERLLVYEYIEKGNLDQWLHEPSSPTLPNDDVFSTDIIRSPLSWETRVNIIRGVAHGLCYLHGLQKPIIHRDIKASNVLLDSEFQAHIADFGLARRMDKSHSHVSTQVAGTIGYMPPEYRDGSNVANPKVDVYSFGVLMIETVSGHRPNLAVKLEGNDIGLVNWARKMKERNTEMEMLDVNVPREEGLKEESVREYVHIACMCTGELQKDRPEMPEVVKLLDSMPL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05224 379 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Trre1g05224 379 SMART serkin_6 87 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05224 379 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Trre1g05224 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Trre1g05224 379 SUPERFAMILY Protein kinase-like (PK-like) 66 374 IPR011009 -
Trre1g05224 379 FunFam Phytosulfokine receptor 2 47 162 - -
Trre1g05224 379 FunFam Phytosulfokine receptor 2 163 378 - -
Trre1g05224 379 Pfam Protein tyrosine and serine/threonine kinase 91 373 IPR001245 GO:0004672|GO:0006468
Trre1g05224 379 CDD STKc_IRAK 93 377 - -
Trre1g05224 379 Gene3D Transferase(Phosphotransferase) domain 1 163 378 - -
Trre1g05224 379 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 376 - -
Trre1g05224 379 ProSiteProfiles Protein kinase domain profile. 87 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05224 Trre-Chr1 58238398 58241015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05224 7 374 Receptor kinase-like Gene Family AT5G07280 38.421 7.64e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre1g05224 PK_Tyr_Ser-Thr 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05224 - - mtr:11410577 654.825