LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05221	ATGGGCTGTGTTCAAGCCAAACCATTAGAATCTGAAGGTTCTTCAGACAACAATAACAACAGAGGACTCAACAGGTTCAAAATGGAAAATGGGTATGTTCCAAGTTCTGATTTTGTTGCTCATAGAAGATCCACTGGTGCTCAAACTAAAACTCATGTTCACAAGAACACTATTGATCAGAAACAACCCAGAAAGCATAAAGTTGTTGTTGATGGTAAAAGTGGAAAGGGAAAGAGAGATAGTGATTTGAAAGATAGTAAGAAACATTTGAATAAATGTTTTGAAGATGAGATGGTTGATGGTTGGCCTAAATGGTTAGTTGATAATGTTCCTATTCAAAGCTTGTCTGGTTTGGTTCCTAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACATACAGCAATGTTTATAAAGCACTAGACCGAGACACGGGCGATATCGTGGCACTCAAAAAGGTCCGCTTCAATACATCAGAGCCTGAAAGCATTAAATTTATGGCAAGAGAAATCACGATATTACAGAAATTGGATCATCCCAATGTAGTAAAACTTAAAGGGCTAGCCACTTCAAGAATGCAGTATAGTATATATCTAGTTTTTGATTTCATGCCAACAGATTTGTCGAGAATTATTACTCGACCAGACGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCATGATAGGGGAATTTTGCATCGAGACATAAAGGGATCAAATCTTTTGATCGATAAAAATGGAATGCTTCAGATTGCCGATTTTGGACTTGCCAATTATTATAGTATAAATCAACAACAGCCTCTCACAAACCGGGTTGTGACGTTATGGTACCGAGCTCCTGAGTTGTTGTTAGGTTCCACAGATTATGGAGTCGGTATTGATCTATGGAGTGCTGGATGTCTCCTTGCAGAAATGTTTAGAGGAGTTCCGATTATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCGTCGCAAGAATATTGGAAAAAGTTAAAACTTTCTACAACTTTTATACCTCCAAAGTCTTATAGACCAAGTCTGGTTGAAACTTTCAAGGATCTGCCTCCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTTCATTCCGCGGCAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCTTTACAAGTCCATTGGCTTGTGATCTATCTGGTCTGCCAACAATCTACAAAGAAGATGATGAGAACATTCAAGCCAAAGAACAAATCAAGTATATCAACTCCAAAATCAGGCGTTCTCGTACATTTATGGAGCGTCGCAAGAATTTATCATCTAATAAGCCAATAGAACCTACTGTATCCTCTAAAGAGGTCTTAAGAAGTAATGCTGAGGCTGAAACTTATGCTCCAAGTCAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCTAGTGTAAACCAAGCTGGAATTGGGGACCACTCACCCCTCTTTATCTCTCCATTTCTTGGTTCTGATCAAAAGTTGCCCCACAAAATCCATAGTAGGCATGCTAATATTGGTGAAAAAAACATCAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAATGTAACCAAGAAAGATGATAGCAGATACAGAACAGACCAAATTTTCAGGTCCACTTCTACCAGAGAATTTAGAAAGCTAAAAACAGAAGAAAATTTAGTCTTTGATTAG	1758	0.3845	MGCVQAKPLESEGSSDNNNNRGLNRFKMENGYVPSSDFVAHRRSTGAQTKTHVHKNTIDQKQPRKHKVVVDGKSGKGKRDSDLKDSKKHLNKCFEDEMVDGWPKWLVDNVPIQSLSGLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKKVRFNTSEPESIKFMAREITILQKLDHPNVVKLKGLATSRMQYSIYLVFDFMPTDLSRIITRPDERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANYYSINQQQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFRGVPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPPKSYRPSLVETFKDLPPSSLGLLCTLLALDPSFRGSASKALKNQFFFTSPLACDLSGLPTIYKEDDENIQAKEQIKYINSKIRRSRTFMERRKNLSSNKPIEPTVSSKEVLRSNAEAETYAPSQEPGSATSSTSSSVNQAGIGDHSPLFISPFLGSDQKLPHKIHSRHANIGEKNIKNLPPLSKSKPNVTKKDDSRYRTDQIFRSTSTREFRKLKTEENLVFD	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05221	585	FunFam	Putative serine/threonine-protein kinase	209	446	-	-
	Trre1g05221	585	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468
	Trre1g05221	585	Gene3D	Phosphorylase Kinase; domain 1	116	208	-	-
	Trre1g05221	585	Gene3D	Transferase(Phosphotransferase) domain 1	209	448	-	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	460	503	-	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	1	28	-	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	44	85	-	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	10	25	-	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	533	560	-	-
	Trre1g05221	585	Pfam	Protein kinase domain	126	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05221	585	PANTHER	CELL DIVISION PROTEIN KINASE	124	413	-	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	54	85	-	-
	Trre1g05221	585	SUPERFAMILY	Protein kinase-like (PK-like)	121	412	IPR011009	-
	Trre1g05221	585	MobiDBLite	consensus disorder prediction	452	503	-	-
	Trre1g05221	585	FunFam	probable serine/threonine-protein kinase At1g54610	113	208	-	-
	Trre1g05221	585	ProSiteProfiles	Protein kinase domain profile.	126	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05221	585	SMART	serkin_6	126	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05221	585	ProSitePatterns	Protein kinases ATP-binding region signature.	132	155	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05221	Trre-Chr1	58203531	58206915	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05221	121	443	Core Cell Cycle Gene Families	AT5G10270	44.575	4.63e-93	293

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre1g05221		Pkinase	3e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05221	K08819		-	gmx:100776854	831.247