Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05207 ATGGCTTCTTCCAGGAGGATCAACTATGCCACTAACAGAGGAGGTTTTTTGACTGCCTACATTCATGGCGAGCCTCATGGAGAGATGAATCCAAAATTTGTCAGGGAGGTTTTCAATGAACTGAAGGACATTATTGTACTGGTAGACAGATCTAACCGTAGTCTCAAAGTTCAGTTCAATAAATCAAAGGAACACCCTATGTTTGTTGCTGGTTGGTCAGAAGTTGGACCATTTTTTGGATTTGAAGAAAGCAAGCTGATCCTCATGACTTATGTTGGTAAGAATCGATTCATTCTTGATTTCCTACCTGAGCCATTTGACCCAAACAGCTTACCAACATGGCATTCCTACAAATATTCTCACAATGAACCTATCTCATTCGAGGTCGAACTCACCAACTATCTAGCAACAGGATCACAGTTGACTTTGAAAAAGAATTTTGCTGACTACGTTAGAGCAACTAAATTCAAAACCGTCATCCTCATTGGTCCACTCGGTGATGAAATAGAGTGCAAGCTTCTGATCAAGACAACTAAAATGAAGAAATCGGTCAAGATTGGTGAAGGTTGGATGGAGTTTGTTGAAAGGAATGGCTTCAATAAGGGAGACATCCTCAATTTCAAATTTATCAACAAGCAGGAGCACAATCTGGTGAATGTGTTTCAATATCAACCTTAG 678 0.3997 MASSRRINYATNRGGFLTAYIHGEPHGEMNPKFVREVFNELKDIIVLVDRSNRSLKVQFNKSKEHPMFVAGWSEVGPFFGFEESKLILMTYVGKNRFILDFLPEPFDPNSLPTWHSYKYSHNEPISFEVELTNYLATGSQLTLKKNFADYVRATKFKTVILIGPLGDEIECKLLIKTTKMKKSVKIGEGWMEFVERNGFNKGDILNFKFINKQEHNLVNVFQYQP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05207 225 CDD B3_DNA 126 221 IPR003340 GO:0003677
Trre1g05207 225 Gene3D - 119 224 IPR015300 -
Trre1g05207 225 Gene3D - 15 102 IPR015300 -
Trre1g05207 225 Pfam B3 DNA binding domain 129 221 IPR003340 GO:0003677
Trre1g05207 225 ProSiteProfiles B3 DNA-binding domain profile. 126 224 IPR003340 GO:0003677
Trre1g05207 225 SUPERFAMILY DNA-binding pseudobarrel domain 123 221 IPR015300 -
Trre1g05207 225 SMART B3_2 127 224 IPR003340 GO:0003677
Trre1g05207 225 SUPERFAMILY DNA-binding pseudobarrel domain 31 98 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05207 Trre-Chr1 58113417 58114342 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g05207 B3 3.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05207 - K01540 tpra:123900141 249.21