Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05206 ATGGCTTCTTCCAGGAGGATCAACTATGCCACTAACAGAGGAGGTTTTTTGACTGCCTACATTCATGGCGAGACTTTGAAAAAGAATTTTGCTGACTACGTTAGAGCAACTAAATTCAAAACCGTCATCCTCATTGGTCCACTCGGTGATGAAATAGAGTGCAAGCTTCTGATCAAGACAACTAAAATGAAGAAATCGGTCAAGATTGGTGAAGGTTGGATGGAGTTTGTTGAAAGGAATGGCTTCAATAAGGGAGACATCCTCAATTTCAAATTTATCAACAAGCAGGAGCACAATCTGGTGAATGTGTTTCAATATCAACCTTAG 327 0.4006 MASSRRINYATNRGGFLTAYIHGETLKKNFADYVRATKFKTVILIGPLGDEIECKLLIKTTKMKKSVKIGEGWMEFVERNGFNKGDILNFKFINKQEHNLVNVFQYQP 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05206 108 SUPERFAMILY DNA-binding pseudobarrel domain 25 104 IPR015300 -
Trre1g05206 108 Pfam B3 DNA binding domain 26 104 IPR003340 GO:0003677
Trre1g05206 108 ProSiteProfiles B3 DNA-binding domain profile. 26 107 IPR003340 GO:0003677
Trre1g05206 108 Gene3D - 11 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05206 Trre-Chr1 58113417 58114342 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g05206 B3 3.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05206 - K20967 tpra:123892179 75.0997