Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05205 ATGACATCTGAACCAATTTCGACATTTTCAATTAACAAAGGAGGATTTTTAACAGCTTACATCTTTGGTCAGCCATATGGAGAAATGAATCCACTCTTCATTGAAGAAATTTATCGTGACCTAAGTGAAGAAATCATTTTAATCGATAGAACAAATCGTCGGCTTACAGTACAATATAATCAGGCCTTTCATCATCCTCTAATTATCAATGGTTGGTCTAAAATGACCACTGTGTTTGGTATTACAAGAAACCAATTCATTCTCTTCACTTATGTTGGTGAAAACAAATTTGTCCTAGATTTCCTACCTGATGAATTTCAACCAAACAAATTACCTAATTATCATTCTTACAAATACCATCTCACTGATCCTATCTCATTTAATGTCACACTCACTCAACATCTTGCTTCTGGATCAGAATTAACTCTTAATCAAAATTTTGCTACTTACATAACAAACTCTGGATTCAAGGAAGTACTGCTTTATGGTCCACAAGGTGATGAAGTTGATTGCCCAATCATAATTACCACAACTCCCAATGAGCAAAGCACCAAAATAGGTGAAGGTTGGAAGACATTCATACAAATTAATAAATTTGTTGCTGGAGATGTTCTCAACTTCAAGTTTGTTAACAAATTCAAGAGCAAGGTTATTAAGGTTATTAAAGTGTGA 672 0.3378 MTSEPISTFSINKGGFLTAYIFGQPYGEMNPLFIEEIYRDLSEEIILIDRTNRRLTVQYNQAFHHPLIINGWSKMTTVFGITRNQFILFTYVGENKFVLDFLPDEFQPNKLPNYHSYKYHLTDPISFNVTLTQHLASGSELTLNQNFATYITNSGFKEVLLYGPQGDEVDCPIIITTTPNEQSTKIGEGWKTFIQINKFVAGDVLNFKFVNKFKSKVIKVIKV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05205 223 ProSiteProfiles B3 DNA-binding domain profile. 126 223 IPR003340 GO:0003677
Trre1g05205 223 Gene3D - 121 221 IPR015300 -
Trre1g05205 223 SUPERFAMILY DNA-binding pseudobarrel domain 33 98 IPR015300 -
Trre1g05205 223 SUPERFAMILY DNA-binding pseudobarrel domain 124 218 IPR015300 -
Trre1g05205 223 Pfam B3 DNA binding domain 129 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05205 Trre-Chr1 58111791 58112673 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05205 43 220 REM Transcription Factor Family AT1G26680 24.590 3.42e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05205 - K07889 tpra:123900141 259.61