Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05203 ATGGACATCTTCATCACTGCAACAGGACATTCTCAAGTCAAATTATCTGGACCTTTGAACAATGTTGTCACAGTAAACTTAATCAGATATGCCGGAAATGGAAGACGTCTTATGTTTGGAGAAGGATGGTCAACTTTTTGTCAACTCAATCAACTATCCGGTGGCAATCTACTTAATTTCAAGACATCAGCTGAATTTGACTACTCTAACATATTTCTCATCGAAGTTGTTTAA 234 0.3675 MDIFITATGHSQVKLSGPLNNVVTVNLIRYAGNGRRLMFGEGWSTFCQLNQLSGGNLLNFKTSAEFDYSNIFLIEVV 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05203 77 SUPERFAMILY DNA-binding pseudobarrel domain 11 63 IPR015300 -
Trre1g05203 77 Pfam B3 DNA binding domain 10 63 IPR003340 GO:0003677
Trre1g05203 77 Gene3D - 4 74 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05203 Trre-Chr1 58102121 58102354 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g05203 B3 2.6e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05203 - K14486 tpra:123914568 62.7734