Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05190 ATGACTGATTCGGAGAGAGGGACACCGACGGCGGCGTCGGTGCCGGCAACACCGGATACTCCAGGAGGTCCACTATTCTCATCGGTGAGAATTGATTCGCTTGAACGTGAGTCATTTGCAATGGGGAGGTGCAACATGTGTATGCCGGGTGGTAAAAGCAATGGTTGCATCAACATGGCTTCTGGTGTTGGAATTCCGAGTGTGTCTCTAGCTCAGAAGATTGGAGCAGAGTTTGTAGGAACATTCATCCTAATATATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACAATGGAGCAGAAACACTTATGGGAAATGCAGCTTGTGCTGGATTAACAGTCATGTTCATTATTCTCTCAATTGGTCACATCTCAGGTGCACATCTCAATCCATCACTCACCATCGCGTTCGCTGCGTTTCGCCATTTTCCTTGGGCACATGTTCCTGCCTACATTGCGGCACAAGTCTCCGCTTCGATCTGCGCTTGCTATGCTCTCAAATGTGTTTACCATCCTTTCCTATCTGGTGGTGTCACTGTCCCTACTGTCGACGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTCACTGCTGTTGCTACTGATTCCCGCGCGGTTGGTGAATTGGCTGGTATTGCTGTTGGGGCTACAGTTTTGCTCAACATTCTTATCTCAGGGCCAACAAGTGGTGGTTCGATGAATCCGGTGCGCACCTTAGGTCCAGCCGTGGCAGCAGGAAACTACAAGCATATCTGGATATATTTGGTGGCGCCAACACTTGGTGCTCTCGCTGGTTCTGGAGTTTATACCCTTATCAAGCTGCGTGACAATGAAGCAGAACCGCCTCGATCGGTTAGGAGCTTCCGTCGCTAG 897 0.4872 MTDSERGTPTAASVPATPDTPGGPLFSSVRIDSLERESFAMGRCNMCMPGGKSNGCINMASGVGIPSVSLAQKIGAEFVGTFILIYAATAGPIVNNKYNGAETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKCVYHPFLSGGVTVPTVDVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGVYTLIKLRDNEAEPPRSVRSFRR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05190 298 MobiDBLite consensus disorder prediction 1 15 - -
Trre1g05190 298 FunFam Aquaporin NIP2-1 61 292 - -
Trre1g05190 298 Pfam Major intrinsic protein 67 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05190 298 SUPERFAMILY Aquaporin-like 68 288 IPR023271 -
Trre1g05190 298 PANTHER AQUAPORIN NIP2-1 63 286 IPR034294 -
Trre1g05190 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Trre1g05190 298 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g05190 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Trre1g05190 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05190 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05190 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05190 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05190 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g05190 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05190 Trre-Chr1 58005121 58011829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05190 25 298 Major Intrinsic Protein MIP AT4G10380 70.357 2.67e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05190 K09874 - gmx:100804356 512.686