Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05178 ATGCATTCTCACATAGACAGAATCCTTTGGACCGAAGACCAAATCTCTCTCCGAATCTCCCAAATCGCCACCCAAATTGTTCACGACTTTTCCGCTCCTTCACCTCCTCCCATCTTTATTGGCGTTCTCACCGGCGCATTCACCTTCCTCGCTGACCTAGTTCGTAAAATTAACCTCCCCGTTACTATTGATTTTGTCAGTTCTAAATCATATGGTTCCGGAACTGTCTCCAACTGCGCTCCCACCATTTCTCGTGACTTGAATGTTGACATTAACGGCCGCCACGTCATATTGGTTGAAGACATTGTAGATACAGGACATACTTTATATAAACTCATTGCACACATGAAGTCAAAAGGAGCATCCTCTGTATCCGTATGCACTCTACTTGACAAACCAGCAAGAAGGAAAGTTAATGTACAGCTTGTGGGTGAAGGAAAATTCTATCGGGGATTTGAGTGTCCAGACAATTTTGTTGTTGGTTATGGAATGGATTTTGACGAATTGTACAGAAATCTACCTTATATTGGTGTCTTGAAACCTGAACATTACAGTTGA 558 0.4247 MHSHIDRILWTEDQISLRISQIATQIVHDFSAPSPPPIFIGVLTGAFTFLADLVRKINLPVTIDFVSSKSYGSGTVSNCAPTISRDLNVDINGRHVILVEDIVDTGHTLYKLIAHMKSKGASSVSVCTLLDKPARRKVNVQLVGEGKFYRGFECPDNFVVGYGMDFDELYRNLPYIGVLKPEHYS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05178 185 FunFam Hypoxanthine phosphoribosyltransferase 1 185 - -
Trre1g05178 185 NCBIfam hypoxanthine phosphoribosyltransferase 8 180 IPR005904 GO:0004422|GO:0006166
Trre1g05178 185 SUPERFAMILY PRTase-like 1 184 IPR029057 -
Trre1g05178 185 Pfam Phosphoribosyl transferase domain 18 166 IPR000836 -
Trre1g05178 185 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 2 184 - -
Trre1g05178 185 CDD PRTases_typeI 19 137 IPR000836 -
Trre1g05178 185 Gene3D - 1 185 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05178 Trre-Chr1 57871960 57874076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05178 1 184 PRT Gene Family AT1G71750 60.513 3.84e-82 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05178 K00760 - gmx:100037484 283.878