Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05171 ATGGCTCCGGCGATGGCGGAATTGACAACTGGAGGGCCATTTGCCAATGCTTCACTTTACGTCGGTGATCTGGAGGCTAGTGTGAACGAAGGACACCTTTTTGATCTGTTCAGCCAAGTTGCTCAGGTTGTATCAATTAGGGTTTGTAGGGATCAGATTAGAAGATCCTCTCTCGGTTATGCTTATGTCAACTTCACCAATGCTCAAGATGCGGCCAATGCGAAGGAACTTTTGAACTTCACTCCCCTGAATGGGAAACCTATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGAACAAGTGGATCTGGCAATGTGTTTGTTAAGAATCTGGAAAAATCGATTGATCACAAGGCATTGCACGACATTTTTGCTTACTTTGGCTCTATACTGTCGTGTAAAGTGGCTCTTGACGGCAATGGTCAGTCAAAAGGGCATGGCTTTATACAGTTTGACAACGAAGAATCTGCGAAGAATGCCATCGAACAGTTGAATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGATCTTTCGTTTGCCACCGGGAAAGACCTAGGACCAATCAATCAACCCAGTTTACTAATGTGTATACAAAAAATCTTTCTGAAACACTAGATGATGAAGAATTGAAGAAGCTATTTAGCCATTTTGGCACGATAACAAGTGCACGAGTCATGAAAGATACAAATGGGAAATCCAAATGCTTCGGTTTTGTGAATTTTAAGAGTCCAGATTCTGCTGCTACTGCAGTCGAGAAGTTAAATGGAACTACTGTCAATGGCGACAAAGTTTTATTTGTGGGGAGAGCTCAGAGTAGAGCAGAAAGGGAACAAGAGCTGAAAGCGAAATTAGAGCAGGATAGACTTAGTAGATACGAGAAATTACAGAGGGCTAACCTGTACTTGAAAAATCTTGATGATGAATTTACTAATGAAAATTTGAAAGATGTGTTTTCTAAGTACGGAACCATAACATCTTGCAAGGTGATGTTGGATTCTCGCGGTCATAGTATTGGTACTGGTTTCGTGGCATTTTCAACTGCAGAGGAAGCAAACAAAGCGATGAATGAAATGAATGGCAAGTTTGTTGGAAGAAAACCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGCTCATTTTGCTGAAATTGTTGCCCCTGGTGGATTGGCACTGCCAGCTGCAGGAATTCATGCATACTATCCAGAGGCATCGAGACTTGCCTCTCAACAGGGTCAAGGCACATATGACTTCATACCACCTCAGCCTGCTGGTGGAATGCAGCCTGGCTTTGCTCCAAATTTTGGTGTGCCGTATCAATTGCAGAGACGGGGTCAAAAATGGCAAAGGAAAGGTGCTCAACGAAATGGAAATCTCCAACACGTGCACCAGAACAAAATGATGCATCGTAACTCGCATCAAGGTTTTAGACACAAGGCTAACAATCGCAATGGCATGGATTCGTCTGGAGTTCCACATGGTCTAGCTGGTCCAATGCTGCCTATGACATTTGATGGTTCTAGAGTTACTGCACCTATTGATAATCAGCATCCCGGGTCTACATCACTTGCCTCAGCTTTAGCTTCTGCAACTCCAGAAAACCAGCTCATGATGTTGGGCGAACATCTTTATCCCCTTGTGGACCGTCTTACAGCAAAGGAACTTACAACAAAGGTGACAGGGATGTTGCTTGAAATGGACCAGGCAGAAGTGATTAATCTCATTGAATCTCCTGATGACCTGAAAACAAAGGTTTCTGAGGCATTGCAAGTCCTTCATGACGCTGCATTGGAATCTAAAGCTGGTGATCAACTTGGTTCGTTGTCATTGAACGAATGA 1863 0.4332 MAPAMAELTTGGPFANASLYVGDLEASVNEGHLFDLFSQVAQVVSIRVCRDQIRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRTSGSGNVFVKNLEKSIDHKALHDIFAYFGSILSCKVALDGNGQSKGHGFIQFDNEESAKNAIEQLNGMLINDKQVYVGSFVCHRERPRTNQSTQFTNVYTKNLSETLDDEELKKLFSHFGTITSARVMKDTNGKSKCFGFVNFKSPDSAATAVEKLNGTTVNGDKVLFVGRAQSRAEREQELKAKLEQDRLSRYEKLQRANLYLKNLDDEFTNENLKDVFSKYGTITSCKVMLDSRGHSIGTGFVAFSTAEEANKAMNEMNGKFVGRKPLFVAVAQRKEERKAQLQAHFAEIVAPGGLALPAAGIHAYYPEASRLASQQGQGTYDFIPPQPAGGMQPGFAPNFGVPYQLQRRGQKWQRKGAQRNGNLQHVHQNKMMHRNSHQGFRHKANNRNGMDSSGVPHGLAGPMLPMTFDGSRVTAPIDNQHPGSTSLASALASATPENQLMMLGEHLYPLVDRLTAKELTTKVTGMLLEMDQAEVINLIESPDDLKTKVSEALQVLHDAALESKAGDQLGSLSLNE 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Trre1g05171 620 Gene3D - 12 105 IPR012677 -
Trre1g05171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Trre1g05171 620 SMART rrm2_1 301 372 IPR003954 GO:0003676
Trre1g05171 620 SMART rrm2_1 18 91 IPR003954 GO:0003676
Trre1g05171 620 SMART rrm2_1 106 178 IPR003954 GO:0003676
Trre1g05171 620 SMART rrm2_1 197 269 IPR003954 GO:0003676
Trre1g05171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Trre1g05171 620 FunFam Poly(A) binding protein cytoplasmic 1 like 188 278 - -
Trre1g05171 620 FunFam Polyadenylate-binding protein 1 99 - -
Trre1g05171 620 SUPERFAMILY PABC (PABP) domain 524 611 IPR036053 GO:0003723
Trre1g05171 620 Gene3D - 525 604 - -
Trre1g05171 620 Gene3D - 182 288 IPR012677 -
Trre1g05171 620 Coils Coil 269 289 - -
Trre1g05171 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Trre1g05171 620 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 605 IPR002004 GO:0003723
Trre1g05171 620 SMART rrm1_1 18 91 IPR000504 GO:0003723
Trre1g05171 620 SMART rrm1_1 301 373 IPR000504 GO:0003723
Trre1g05171 620 SMART rrm1_1 106 178 IPR000504 GO:0003723
Trre1g05171 620 SMART rrm1_1 197 270 IPR000504 GO:0003723
Trre1g05171 620 CDD RRM3_I_PABPs 195 275 - -
Trre1g05171 620 Gene3D - 106 179 IPR012677 -
Trre1g05171 620 CDD RRM2_I_PABPs 103 178 IPR045305 -
Trre1g05171 620 SMART poly_2 539 603 IPR002004 GO:0003723
Trre1g05171 620 PANTHER RNA BINDING PROTEIN 17 79 - -
Trre1g05171 620 Gene3D - 296 395 IPR012677 -
Trre1g05171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 265 IPR000504 GO:0003723
Trre1g05171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Trre1g05171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Trre1g05171 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 369 IPR000504 GO:0003723
Trre1g05171 620 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 17 600 IPR006515 GO:0003723
Trre1g05171 620 FunFam Poly(A) binding protein cytoplasmic 1 like 292 381 - -
Trre1g05171 620 SUPERFAMILY RNA-binding domain, RBD 195 381 IPR035979 GO:0003676
Trre1g05171 620 Pfam Poly-adenylate binding protein, unique domain 535 600 IPR002004 GO:0003723
Trre1g05171 620 FunFam Polyadenylate-binding protein 100 186 - -
Trre1g05171 620 SUPERFAMILY RNA-binding domain, RBD 17 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05171 Trre-Chr1 57824534 57828459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05171 16 600 Eukaryotic Initiation Factors Gene Family AT1G22760 54.380 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05171 K13126 - gmx:100783163 888.256