Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05170 ATGGCTCCGGCGATGGCGGAATTGACAACTGGAGGGCCATTTGCCAATGCTTCACTTTACGTCGGTGATCTGGAGGCTAGTGTGAACGAAGGACACCTTTTTGATCTGTTCAGCCAAGTTGCTCAGGTTGTATCAATTAGGGTTTGTAGGGATCAGATTAGAAGATCCTCTCTCGGTTATGCTTATGTCAACTTCACCAATGCTCAAGATGCGGCCAATGCGAAGGAACTTTTGAACTTCACTCCCCTGAATGGGAAACCTATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGAACAAGTGGATCTGGCAATGTGTTTGTTAAGAATCTGGAAAAATCGATTGATCACAAGGCATTGCACGACATTTTTGCTTACTTTGGCTCTATACTGTCGTGTAAAGTGGCTCTTGACGGCAATGGTCAGTCAAAAGGGCATGGCTTTATACAGTTTGACAACGAAGAATCTGCGAAGAATGCCATCGAACAGTTGAATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGATCTTTCGTTTGCCACCGGGAAAGACCTAGGACCAATCAATCAACCCAGTTTACTAATGTGTATACAAAAAATCTTTCTGAAACACTAGATGATGAAGAATTGAAGAAGCTATTTAGCCATTTTGGCACGATAACAAGTGCACGAGTCATGAAAGATACAAATGGGAAATCCAAATGCTTCGGTTTTGTGAATTTTAAGAGTCCAGATTCTGCTGCTACTGCAGTCGAGAAGTTAAATGGAACTACTGTCAATGGCGACAAAGTTTTATTTGTGGGGAGAGCTCAGAGTAGAGCAGAAAGGGAACAAGAGCTGAAAGCGAAATTAGAGCAGGATAGACTTAGTAGATACGAGAAATTACAGAGGGCTAACCTGTACTTGAAAAATCTTGATGATGAATTTACTAATGAAAATTTGAAAGATGTGTTTTCTAAGTACGGAACCATAACATCTTGCAAGGTGATGTTGGATTCTCGCGGTCATAGTATTGGTACTGGTTTCGTGGCATTTTCAACTGCAGAGGAAGCAAACAAAGCGATGAATGAAATGAATGGCAAGTTTGTTGGAAGAAAACCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGCTCATTTTGCTGAAATTGTTGCCCCTGGTGGATTGGCACTGCCAGCTGCAGGAATTCATGCATACTATCCAGAGGCATCGAGACTTGCCTCTCAACAGGGTCAAGGCACATATGACTTCATACCACCTCAGCCTGCTGGTGGAATGCAGCCTGGCTTTGCTCCAAATTTTGGTGTGCCGTATCAATTGCAGAGACGGGGTCAAAAATGGCAAAGGAAAGGTGCTCAACGAAATGGAAATCTCCAACACGTGCACCAGAACAAACAGATGATGCATCGTAACTCGCATCAAGGTTTTAGACACAAGGCTAACAATCGCAATGGCATGGATTCGTCTGGAGTTCCACATGGTCTAGCTGGTCCAATGCTGCCTATGACATTTGATGGTTCTAGAGTTACTGCACCTATTGATAATCAGCATCCCGGGTCTACATCACTTGCCTCAGCTTTAGCTTCTGCAACTCCAGAAAACCAGCTCATGATGTTGGGCGAACATCTTTATCCCCTTGTGGACCGTCTTACAGCAAAGGAACTTACAACAAAGGTGACAGGGATGTTGCTTGAAATGGACCAGGCAGAAGTGATTAATCTCATTGAATCTCCTGATGACCTGAAAACAAAGGTTTCTGAGGCATTGCAAGTCCTTCATGACGCTGCATTGGAATCTAAAGCTGGTGATCAACTTGGTTCGTTGTCATTGAACGAATGA 1866 0.4335 MAPAMAELTTGGPFANASLYVGDLEASVNEGHLFDLFSQVAQVVSIRVCRDQIRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRTSGSGNVFVKNLEKSIDHKALHDIFAYFGSILSCKVALDGNGQSKGHGFIQFDNEESAKNAIEQLNGMLINDKQVYVGSFVCHRERPRTNQSTQFTNVYTKNLSETLDDEELKKLFSHFGTITSARVMKDTNGKSKCFGFVNFKSPDSAATAVEKLNGTTVNGDKVLFVGRAQSRAEREQELKAKLEQDRLSRYEKLQRANLYLKNLDDEFTNENLKDVFSKYGTITSCKVMLDSRGHSIGTGFVAFSTAEEANKAMNEMNGKFVGRKPLFVAVAQRKEERKAQLQAHFAEIVAPGGLALPAAGIHAYYPEASRLASQQGQGTYDFIPPQPAGGMQPGFAPNFGVPYQLQRRGQKWQRKGAQRNGNLQHVHQNKQMMHRNSHQGFRHKANNRNGMDSSGVPHGLAGPMLPMTFDGSRVTAPIDNQHPGSTSLASALASATPENQLMMLGEHLYPLVDRLTAKELTTKVTGMLLEMDQAEVINLIESPDDLKTKVSEALQVLHDAALESKAGDQLGSLSLNE 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05170 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Trre1g05170 621 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 528 606 IPR002004 GO:0003723
Trre1g05170 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Trre1g05170 621 SMART poly_2 540 604 IPR002004 GO:0003723
Trre1g05170 621 SMART rrm2_1 301 372 IPR003954 GO:0003676
Trre1g05170 621 SMART rrm2_1 18 91 IPR003954 GO:0003676
Trre1g05170 621 SMART rrm2_1 106 178 IPR003954 GO:0003676
Trre1g05170 621 SMART rrm2_1 197 269 IPR003954 GO:0003676
Trre1g05170 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Trre1g05170 621 FunFam Poly(A) binding protein cytoplasmic 1 like 188 278 - -
Trre1g05170 621 SUPERFAMILY PABC (PABP) domain 476 612 IPR036053 GO:0003723
Trre1g05170 621 FunFam Polyadenylate-binding protein 1 99 - -
Trre1g05170 621 Gene3D - 526 605 - -
Trre1g05170 621 Coils Coil 269 289 - -
Trre1g05170 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Trre1g05170 621 SMART rrm1_1 18 91 IPR000504 GO:0003723
Trre1g05170 621 SMART rrm1_1 301 373 IPR000504 GO:0003723
Trre1g05170 621 SMART rrm1_1 106 178 IPR000504 GO:0003723
Trre1g05170 621 SMART rrm1_1 197 270 IPR000504 GO:0003723
Trre1g05170 621 CDD RRM3_I_PABPs 195 275 - -
Trre1g05170 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 265 IPR000504 GO:0003723
Trre1g05170 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Trre1g05170 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Trre1g05170 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 369 IPR000504 GO:0003723
Trre1g05170 621 Gene3D - 106 179 IPR012677 -
Trre1g05170 621 CDD RRM2_I_PABPs 103 178 IPR045305 -
Trre1g05170 621 Pfam Poly-adenylate binding protein, unique domain 536 601 IPR002004 GO:0003723
Trre1g05170 621 SUPERFAMILY RNA-binding domain, RBD 195 381 IPR035979 GO:0003676
Trre1g05170 621 Gene3D - 12 105 IPR012677 -
Trre1g05170 621 Gene3D - 296 395 IPR012677 -
Trre1g05170 621 Gene3D - 182 288 IPR012677 -
Trre1g05170 621 SUPERFAMILY RNA-binding domain, RBD 17 179 IPR035979 GO:0003676
Trre1g05170 621 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 17 601 IPR006515 GO:0003723
Trre1g05170 621 FunFam Poly(A) binding protein cytoplasmic 1 like 292 381 - -
Trre1g05170 621 PANTHER OS02G0815200 PROTEIN 277 448 - -
Trre1g05170 621 FunFam Polyadenylate-binding protein 100 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05170 Trre-Chr1 57824534 57828459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05170 16 601 Eukaryotic Initiation Factors Gene Family AT1G22760 54.545 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05170 K13126 - gmx:100783163 885.174