Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05168 ATGGAAGCTGTAAATTCTTCAGCTATGGGTCAGTCTCCGACTGTTGTGGCTCCGGCGACGGCAGCATTGACAACCGGAGGGCCATTTGCGAATAGATCGCTTTATGTAGGTGATCTGGAAGAGTGTGTTGATGAGGGAGAGCTTTTTGATCTATTCAGCCAAGTTGCTCAGGTTGTATCAATTAGGGTTTGTAGGGATCAGACTAGACGATCCTCTCTCGGTTACGCATATGTCAATTTCACCAATGCTCAAGATGCGGCTAATGCGAAGGAACTTTTGAACTTCACTCCCCTGAATGGGAAACCTATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGAACAAGTGGATCTGGCAATGTGTTTGTTAAGAATCTGGAAAAATCGATTGATCACAAGGCATTGCACGACATTTTTGCTTACTTTGGTTCTATACTGTCGTGTAAAGTGGCTCTTGACGGAAATGGTCAGTCAAAAGGGTATGGTTTCATACAGTTTGACAACGAAGAATCTGCGAAGAAGGCCATCGAACAGTTGAATGGCATGTTGATAAATGATAAACAAATCTATGTTGGATCTTTCGTTTGCCACCAACAAAGAGCTAGGACCAATCAATCACCCCAGTCTACTAATTTGTATGTCAAAAATATTTCGGAAACACTAACTGATGAAGAATTGAAGCAGCTATTTAGCCATTTTGGCACGATAACAAGTGCAAGAGTCATGAAAGATACAAATGGGAAATCCAGATGCTTCGGTTTTGTGAATTTTAAGAGTCCAGAATCTGCTGCTACTGCAGTGGAGAAGTTAAATGGAACTACTGTCAATGGCGACAAAGTTTTATTTGTGGGGAGAGCTCAGAGTAGAGCAGAAAGGGAACAAGAGCGTAAAGCCAAATTAGAGCAGGAAAGACTTAGTAGATACGAGAAATTACAGAGGGCTAACCTGTACTTGAAAAATCTTGATGATGATTTTACTAATGAAAATTTGAAAGATATGTTTTCTAAGTACGGAACCATAACATCTTGCAAGGTGATGTTGGATTCTCGTGGTCGTAGTACTGGTACTGGTTTCGTGGCATATTCAACTCCAGAGGAAGCAAACAAAGCGATGAATGAAATGAATGGTAAGTTTGTTGGAAGAAAGCCTCTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGCTCATTTTGCTGAAATTGTTGCCCCTGGTGGATTGGCACTGCCAGCTGCAGGAATTCATGCATACTATCCAGAGGCATCGAGACTTGCCTCTCAACAGTATGACTTCATACCACCTCAGCCTGCTGGTGGAGTGCAGCCTGGCTTTGCTCCAAATTTTGTTGTGCCGTATCAACTGCAGAGACAGGGTCAAAAATGGCAAAGGAAAGGTGCTCAACGAAATGGAAATCTCCAACACGTGCACCAGAACAAACAGATGATGCATCGTAACTCGTATCAAGGTCTTAGACACATGGCTAACAATCGAAATGGCATAGATTCGTCTGGAGTTCCTCATGGTCTAGCTGGTCCAATGTTGCCTATGACATTTGATGGTTCTGGAGTTACTGCACCTATTGATAATCAGCATCCCGGGTCTACATCACTTGCCTCAGCTTTAGCTTCTGCAACTCCAGAAAACCAGCGCATGATGTTGGGCGAACATCTTTATCCCCTTGTGGACCGTCTTACAGCAAAGGAACTTTCAACAAAGGTGACTGGGATGTTGCTTGAAATGGACCAGGCAGAAGTGATTAATCTCATTGAATCTCCTGATGACCTGAAAACAAAGGTTTCTGAGGCATTGCAAGTCCTTCATGACGCTGCATTGGAATCTAAAGCTGGTGATCAACTTGGTTCGTTGTCATTGAACGAATGA 1899 0.4318 MEAVNSSAMGQSPTVVAPATAALTTGGPFANRSLYVGDLEECVDEGELFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRTSGSGNVFVKNLEKSIDHKALHDIFAYFGSILSCKVALDGNGQSKGYGFIQFDNEESAKKAIEQLNGMLINDKQIYVGSFVCHQQRARTNQSPQSTNLYVKNISETLTDEELKQLFSHFGTITSARVMKDTNGKSRCFGFVNFKSPESAATAVEKLNGTTVNGDKVLFVGRAQSRAEREQERKAKLEQERLSRYEKLQRANLYLKNLDDDFTNENLKDMFSKYGTITSCKVMLDSRGRSTGTGFVAYSTPEEANKAMNEMNGKFVGRKPLFVAVAQRKEERKAQLQAHFAEIVAPGGLALPAAGIHAYYPEASRLASQQYDFIPPQPAGGVQPGFAPNFVVPYQLQRQGQKWQRKGAQRNGNLQHVHQNKQMMHRNSYQGLRHMANNRNGIDSSGVPHGLAGPMLPMTFDGSGVTAPIDNQHPGSTSLASALASATPENQRMMLGEHLYPLVDRLTAKELSTKVTGMLLEMDQAEVINLIESPDDLKTKVSEALQVLHDAALESKAGDQLGSLSLNE 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05168 632 Pfam Poly-adenylate binding protein, unique domain 547 612 IPR002004 GO:0003723
Trre1g05168 632 FunFam Polyadenylate-binding protein 11 114 - -
Trre1g05168 632 Gene3D - 537 616 - -
Trre1g05168 632 FunFam Polyadenylate-binding protein 115 201 - -
Trre1g05168 632 CDD RRM3_I_PABPs 211 290 - -
Trre1g05168 632 Gene3D - 27 120 IPR012677 -
Trre1g05168 632 SMART poly_2 551 615 IPR002004 GO:0003723
Trre1g05168 632 Gene3D - 121 205 IPR012677 -
Trre1g05168 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Trre1g05168 632 Gene3D - 314 410 IPR012677 -
Trre1g05168 632 SUPERFAMILY RNA-binding domain, RBD 31 194 IPR035979 GO:0003676
Trre1g05168 632 Gene3D - 206 313 IPR012677 -
Trre1g05168 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723
Trre1g05168 632 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 612 IPR006515 GO:0003723
Trre1g05168 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 280 IPR000504 GO:0003723
Trre1g05168 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Trre1g05168 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 384 IPR000504 GO:0003723
Trre1g05168 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Trre1g05168 632 PANTHER RNA BINDING PROTEIN 32 94 - -
Trre1g05168 632 SMART rrm1_1 316 388 IPR000504 GO:0003723
Trre1g05168 632 SMART rrm1_1 212 285 IPR000504 GO:0003723
Trre1g05168 632 SMART rrm1_1 121 193 IPR000504 GO:0003723
Trre1g05168 632 SMART rrm1_1 33 106 IPR000504 GO:0003723
Trre1g05168 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Trre1g05168 632 Coils Coil 284 312 - -
Trre1g05168 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 617 IPR002004 GO:0003723
Trre1g05168 632 SUPERFAMILY PABC (PABP) domain 487 623 IPR036053 GO:0003723
Trre1g05168 632 SUPERFAMILY RNA-binding domain, RBD 208 395 IPR035979 GO:0003676
Trre1g05168 632 CDD RRM2_I_PABPs 118 193 IPR045305 -
Trre1g05168 632 FunFam Poly(A) binding protein cytoplasmic 1 like 307 396 - -
Trre1g05168 632 CDD RRM4_I_PABPs 316 392 - -
Trre1g05168 632 SMART rrm2_1 212 284 IPR003954 GO:0003676
Trre1g05168 632 SMART rrm2_1 121 193 IPR003954 GO:0003676
Trre1g05168 632 SMART rrm2_1 316 387 IPR003954 GO:0003676
Trre1g05168 632 SMART rrm2_1 33 106 IPR003954 GO:0003676
Trre1g05168 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Trre1g05168 632 FunFam Poly(A) binding protein cytoplasmic 1 like 203 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05168 Trre-Chr1 57807177 57811037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05168 12 612 Eukaryotic Initiation Factors Gene Family AT1G22760 54.167 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05168 K13126 - gmx:100783163 867.455