Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05157 ATGGGTGCGGTTTCGGAATCTGCTCTCAGTGAGGTGATGTCATCCATGCCTGGTTTTCGCTTCCATCCTACAGATGAGGAGTTGGTGATGTACTATCTAAAAAAGAAGATTTGTGGGAAGAAGTTGAAGCTCAACGTGATTTGTGAAACCGATGTGTACAAATGGGATCCCGAGGATTTGCCTGATCAATCTTTCCTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGGAAGGTCTAACCGAGCAACTAGACATGGATACTGGAAAGCAACAGGAAAAGATAGAAATGTGATATTTAATTCTCGGTCAGTTGGAGTTAAAAAGACACTAGTTTTCTATTTCGGCAGAGCTCCTAATGGTGAACGAACTGACTGGGTTATGCATGAATACACCATGGATGAAGAAGAGCTTAAAAGATGCCATGATGTTAAGGAATATTATGCTCTTTACAAGGTGTTCAAGAAAAGTGGACCTGGTCCTAAGAATGGCGAACAATATGGTGCACCATTTAGAGAAGAAGACTGGGCAGATGACAATGTTGTAGATTTTAATGTTAAATCAGCTCAGCTGGAGGCTCCAAAGGCTTTTGTTAACACTTTTACCGATCAGCCACAGGCGTTGGCTGTTATTAATGCTTCTACCGATCAGCTGCAGCCGTTGTCAGATGATGAACTTGACGAAATCTTTAAAGGGGTTTTTGATATTGAGCCTGTCCGTGACCAGCAACATGTTAATGGTTGTGCCGACTTTCCTCAGGTTGTTGCTGAAGAAACACAAAGTATGGTCATGGGTCAATTCTCTGAGGCCATGATCTTCCCTGACGCAAGTGGGAAATTGCAATCTAGCGGTCAGCATTATGATGTACAGCGCGACTTTGACTTCAATCACTCAGCTACTTCTCACTTATCTGAAGCACCTGAGGTCACTTCTGCTCCCAACATTCAAAGCGATGAGGGGCTTGTCTTTTACGAGGACGGCTTCTTGGAAATTAATGATCTAATTGATACTGAACCAGCATTTTCAAATACGGAAAAGTTCAACATTGATCTCATTGATAACCTCCAATTTGAAGATGGGTTAAGTGAATTTGATCTGTACCAAGATGCAGAGATGTTTCTTTGCGGCAACGAAACTGTTTCACATGCACATATGAATAATTTTGGCAGCAGTATTGAAAATCAGAGTTACCAGTTGCTGTCCAATCCAGAGGTCGTCAATCAAACTGTTGATGAATTCTGGATGCATGTCGAAAGAAACACACGGAATACAACAGAAGACTACGCTGGTTCTTTCTCTCAAACAAATCCAGGTGTTGTGTATGACTCTGTCAGCTTTCCTACCGAAAGCACTGAAAATCAAAGTACTGTGGAAGATGCTATTACTACAACTACAAGTAGATTCTCCTCTGCTCTATGGGCCTTTGTTGATTCAATACCTACCACTCCAGCATCAGCAGCTGAAAATCCTCTTGTGAACCGGGCTTTGAATAGAATGTCTAGTTTCAGCAGGGTGAAGATCAATCCCACCAACATTGCTGCAGGTATTGATACTACAACTATGAAGAGACCAGGCAGAAAGGGATTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGTTATTCTATTGGAAATTTAAGACTATTAGGGAGATGCATCTCCCCTTGA 1710 0.417 MGAVSESALSEVMSSMPGFRFHPTDEELVMYYLKKKICGKKLKLNVICETDVYKWDPEDLPDQSFLKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNVIFNSRSVGVKKTLVFYFGRAPNGERTDWVMHEYTMDEEELKRCHDVKEYYALYKVFKKSGPGPKNGEQYGAPFREEDWADDNVVDFNVKSAQLEAPKAFVNTFTDQPQALAVINASTDQLQPLSDDELDEIFKGVFDIEPVRDQQHVNGCADFPQVVAEETQSMVMGQFSEAMIFPDASGKLQSSGQHYDVQRDFDFNHSATSHLSEAPEVTSAPNIQSDEGLVFYEDGFLEINDLIDTEPAFSNTEKFNIDLIDNLQFEDGLSEFDLYQDAEMFLCGNETVSHAHMNNFGSSIENQSYQLLSNPEVVNQTVDEFWMHVERNTRNTTEDYAGSFSQTNPGVVYDSVSFPTESTENQSTVEDAITTTTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKINPTNIAAGIDTTTMKRPGRKGFSFLFFPILIALCAFLCYSIGNLRLLGRCISP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05157 569 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Trre1g05157 569 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
Trre1g05157 569 ProSiteProfiles NAC domain profile. 15 165 IPR003441 GO:0003677|GO:0006355
Trre1g05157 569 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 266 - -
Trre1g05157 569 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Trre1g05157 569 FunFam Nac domain-containing protein 86 24 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05157 Trre-Chr1 57728183 57731573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05157 15 567 NAC Transcription Factor Family AT1G34190 43.471 2.21e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g05157 NAM 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05157 - - mtr:25485018 886.33