Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05153 ATGGCTTCTTCTCAGTCTCAGCATCGCTGTGTGTTTGTTGGAAATATACCTTATGATGCAACAGAGGAACAGCTTATTGAAATTTGCCAAGAGGTCGGTCCTGTAGTTTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACATCAACTGTTGATCCTCAGAAACAGGCAGGCATCCCGGCTGTCCAAGGCGATTCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCGGCTCTAGGTGGCGCTCAGACTAGTATCCAGTCAAATCAAAATGGTTTGCAGAATCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCCGAGCTTAAGGGAATGGCTACACATAACAAGGAGATGTCTCGCCAGCTGTTACTATCAAGGCCACAGTTGCCGAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCGGATCAAACCTCACAGTCTTTAATGAATGAAGGCCTCCTTGGCCAGGCTCAGCAAACACTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAAATTGCAGTCCGGCTTGACACCTTACATTCAAGAAGGCCAAGTCAACAATCTACCTCATAACCCTTTGGCTCCTAATCAATTAACTGCAAATCCAAAGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATCACCCAAGCAACCATTTTGTACAGCTCGGAACAGGACAGCCTAATTTAATGCATCCTTCTGTACGTCCCCCGCCTTTGGGGAATTTGTCTGTCAGGCCTCCAATTCAACCAGCAAGTTCAACAGCTTTGAACCAGCAAACACATGCCTCATTCCTACAGCATCCAGTACGTGTTGGAAACTCAACTGTCTCACATAATATTCAAATGGTTCGTCCAGATGCCAGCTTTCAGGCAGGCCCCTCCATGTCATCTGGTATTTCTCAGTTATTTAGTAAGGAAAGTAGTAGTAAATATTCAAACATGTCTTCGGGAGTAGAGAATACAGGCATGGTTCGGGATATTCCAGAATCTTTTACTCGACCATCAAAGCTCACTAAATTGAATGATGGAAGGGGATCCTCTCTCTCTGCTGGGACTTCAGACATGCCTGTCTCTAATGGATCATCACATATGCTTGGAAGTAGTTCAATACCTGTACCTGCAGTTCCTAAAGCAGAAGTGCGGCATTCTGATCAACAATCTTCACAGTCACAGCTTCCATCTGATGTGGAGTCTGCTTTATTGCAACAAGTGTTGAATCTAACACCAGAACAGTTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAGCGAGATCAGATGCAGCACTCATAA 1632 0.4491 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRGGPGMTSTVDPQKQAGIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTSIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSDQTSQSLMNEGLLGQAQQTLVQTVAALPPYGQSKLQSGLTPYIQEGQVNNLPHNPLAPNQLTANPKPPMQPRIPLQHHPSNHFVQLGTGQPNLMHPSVRPPPLGNLSVRPPIQPASSTALNQQTHASFLQHPVRVGNSTVSHNIQMVRPDASFQAGPSMSSGISQLFSKESSSKYSNMSSGVENTGMVRDIPESFTRPSKLTKLNDGRGSSLSAGTSDMPVSNGSSHMLGSSSIPVPAVPKAEVRHSDQQSSQSQLPSDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05153 543 Gene3D - 498 539 IPR038192 -
Trre1g05153 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Trre1g05153 543 FunFam Cleavage stimulating factor 64 160 235 - -
Trre1g05153 543 MobiDBLite consensus disorder prediction 486 501 - -
Trre1g05153 543 CDD RRM_CSTF2_RNA15_like 9 85 - -
Trre1g05153 543 Gene3D - 1 115 IPR012677 -
Trre1g05153 543 MobiDBLite consensus disorder prediction 482 501 - -
Trre1g05153 543 FunFam Cleavage stimulating factor 64 2 118 - -
Trre1g05153 543 MobiDBLite consensus disorder prediction 81 96 - -
Trre1g05153 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Trre1g05153 543 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Trre1g05153 543 SMART rrm1_1 10 83 IPR000504 GO:0003723
Trre1g05153 543 Gene3D - 161 235 - -
Trre1g05153 543 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 539 - -
Trre1g05153 543 MobiDBLite consensus disorder prediction 81 111 - -
Trre1g05153 543 MobiDBLite consensus disorder prediction 418 476 - -
Trre1g05153 543 FunFam Related to Cleavage stimulation factor 496 538 - -
Trre1g05153 543 Pfam Transcription termination and cleavage factor C-terminal 504 537 IPR026896 GO:0031124
Trre1g05153 543 MobiDBLite consensus disorder prediction 439 473 - -
Trre1g05153 543 MobiDBLite consensus disorder prediction 517 543 - -
Trre1g05153 543 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 233 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05153 Trre-Chr1 57695227 57700323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05153 11 82 Eukaryotic Initiation Factors Gene Family AT1G49760 31.944 6.32e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05153 K14407 - gmx:100794399 742.265