LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05152	ATGGCTTCTTCTCAGTCTCAGCATCGCTGTGTGTTTGTTGGAAATATACCTTATGATGCAACAGAGGAACAGCTTATTGAAATTTGCCAAGAGGTCGGTCCTGTAGTTTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACATCAACTGTTGATCCTCAGAAACAGGCAGGCATCCCGGCTGTCCAAGGCGATTCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCGGCTCTAGGTGGCGCTCAGACTAGTATCCAGTCAAATCAAAATGGTTTGCAGAATCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCCGAGCTTAAGGGAATGGCTACACATAACAAGGAGATGTCTCGCCAGCTGTTACTATCAAGGCCACAGTTGCCGAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCGGATCAAACCTCACAGTCTTTAATGAATGAAGGCCTCCTTGGCCAGGCTCAGCAAACACTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAAATTGCAGTCCGGCTTGACACCTTACATTCAAGAAGGCCAAGTCAACAATCTACCTCATAACCCTTTGGCTCCTAATCAATTAACTGCAAATCCAAAGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATCACCCAAGCAACCATTTTGTACAGCTCGGAACAGGACAGCCTAATTTAATGCATCCTTCTGTACGTCCCCCGCCTTTGGGGAATTTGTCTGTCAGGCCTCCAATTCAACCAGCAAGTTCAACAGCTTTGAACCAGCAAACACATGCCTCATTCCTACAGCATCCAGTACGTGTTGGAAACTCAACTGTCTCACATAATATTCAAATGGTTCGTCCAGATGCCAGCTTTCAGGCAGGCCCCTCCATGTCATCTGGTATTTCTCAGTTATTTAGTAAGGAAAGTAGTAGTAAATATTCAAACATGTCTTCGGGAGTAGAGAATACAGGCATGGTTCGGGATATTCCAGAATCTTTTACTCGACCATCAAAGCTCACTAAATTGAATGATGGAAGGGGATCCTCTCTCTCTGCTGGGACTTCAGACATGCCTGTCTCTAATGGATCATCACATATGCTTGGAAGTAGTTCAATACCTGTACCTGCAGTTCCTAAAGCAGAAGTGCGGCATTCTGATCAACAATCTTCACAGCTTCCATCTGATGTGGAGTCTGCTTTATTGCAACAAGTGTTGAATCTAACACCAGAACAGTTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAGCGAGATCAGATGCAGCACTCATAA	1626	0.449	MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRGGPGMTSTVDPQKQAGIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTSIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSDQTSQSLMNEGLLGQAQQTLVQTVAALPPYGQSKLQSGLTPYIQEGQVNNLPHNPLAPNQLTANPKPPMQPRIPLQHHPSNHFVQLGTGQPNLMHPSVRPPPLGNLSVRPPIQPASSTALNQQTHASFLQHPVRVGNSTVSHNIQMVRPDASFQAGPSMSSGISQLFSKESSSKYSNMSSGVENTGMVRDIPESFTRPSKLTKLNDGRGSSLSAGTSDMPVSNGSSHMLGSSSIPVPAVPKAEVRHSDQQSSQLPSDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05152	541	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	9	87	IPR000504	GO:0003723
	Trre1g05152	541	Gene3D	-	489	537	IPR038192	-
	Trre1g05152	541	CDD	RRM_CSTF2_RNA15_like	9	85	-	-
	Trre1g05152	541	Gene3D	-	1	115	IPR012677	-
	Trre1g05152	541	MobiDBLite	consensus disorder prediction	515	541	-	-
	Trre1g05152	541	FunFam	Cleavage stimulating factor 64	160	235	-	-
	Trre1g05152	541	Pfam	Hinge domain of cleavage stimulation factor subunit 2	164	233	IPR025742	-
	Trre1g05152	541	FunFam	Cleavage stimulating factor 64	2	118	-	-
	Trre1g05152	541	MobiDBLite	consensus disorder prediction	81	96	-	-
	Trre1g05152	541	Gene3D	-	161	235	-	-
	Trre1g05152	541	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	11	81	IPR000504	GO:0003723
	Trre1g05152	541	Pfam	Transcription termination and cleavage factor C-terminal	502	535	IPR026896	GO:0031124
	Trre1g05152	541	SUPERFAMILY	RNA-binding domain, RBD	5	105	IPR035979	GO:0003676
	Trre1g05152	541	PANTHER	CLEAVAGE STIMULATION FACTOR SUBUNIT 2	3	537	-	-
	Trre1g05152	541	SMART	rrm1_1	10	83	IPR000504	GO:0003723
	Trre1g05152	541	MobiDBLite	consensus disorder prediction	81	111	-	-
	Trre1g05152	541	FunFam	Related to Cleavage stimulation factor	494	536	-	-
	Trre1g05152	541	MobiDBLite	consensus disorder prediction	415	476	-	-
	Trre1g05152	541	MobiDBLite	consensus disorder prediction	439	473	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05152	Trre-Chr1	57695227	57700323	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05152	11	82	Eukaryotic Initiation Factors Gene Family	AT1G49760	31.944	6.51e-06	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05152	K14407		-	gmx:100794399	753.436