Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05151 ATGAGCAAAAGAGCTTCACCTTCTTCTCCGCTTGATTTCATGGCTTCTTCTCAGTCTCAGCATCGCTGTGTGTTTGTTGGAAATATACCTTATGATGCAACAGAGGAACAGCTTATTGAAATTTGCCAAGAGGTCGGTCCTGTAGTTTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACATCAACTGTTGATCCTCAGAAACAGGCAGGCATCCCGGCTGTCCAAGGCGATTCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCGGCTCTAGGTGGCGCTCAGACTAGTATCCAGTCAAATCAAAATGGTTTGCAGAATCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCCGAGCTTAAGGGAATGGCTACACATAACAAGGAGATGTCTCGCCAGCTGTTACTATCAAGGCCACAGTTGCCGAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCGGATCAAACCTCACAGTCTTTAATGAATGAAGGCCTCCTTGGCCAGGCTCAGCAAACACTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAAATTGCAGTCCGGCTTGACACCTTACATTCAAGAAGGCCAAGTCAACAATCTACCTCATAACCCTTTGGCTCCTAATCAATTAACTGCAAATCCAAAGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATCACCCAAGCAACCATTTTGTACAGCTCGGAACAGGACAGCCTAATTTAATGCATCCTTCTGTACGTCCCCCGCCTTTGGGGAATTTGTCTGTCAGGCCTCCAATTCAACCAGCAAGTTCAACAGCTTTGAACCAGCAAACACATGCCTCATTCCTACAGCATCCAGTACGTGTTGGAAACTCAACTGTCTCACATAATATTCAAATGGTTCGTCCAGATGCCAGCTTTCAGGCAGGCCCCTCCATGTCATCTGGTATTTCTCAGTTATTTAGTAAGGAAAGTAGTAGTAAATATTCAAACATGTCTTCGGGAGTAGAGAATACAGGCATGGTTCGGGATATTCCAGAATCTTTTACTCGACCATCAAAGCTCACTAAATTGAATGATGGAAGGGGATCCTCTCTCTCTGCTGGGACTTCAGACATGCCTGTCTCTAATGGATCATCACATATGCTTGGAAGTAGTTCAATACCTGTACCTGCAGTTCCTAAAGCAGAAGTGCGGCATTCTGATCAACAATCTTCACAGTCACAGCTTCCATCTGATGTGGAGTCTGCTTTATTGCAACAAGTGTTGAATCTAACACCAGAACAGTTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAGCGAGATCAGATGCAGCACTCATAA 1671 0.4488 MSKRASPSSPLDFMASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRGGPGMTSTVDPQKQAGIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTSIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSDQTSQSLMNEGLLGQAQQTLVQTVAALPPYGQSKLQSGLTPYIQEGQVNNLPHNPLAPNQLTANPKPPMQPRIPLQHHPSNHFVQLGTGQPNLMHPSVRPPPLGNLSVRPPIQPASSTALNQQTHASFLQHPVRVGNSTVSHNIQMVRPDASFQAGPSMSSGISQLFSKESSSKYSNMSSGVENTGMVRDIPESFTRPSKLTKLNDGRGSSLSAGTSDMPVSNGSSHMLGSSSIPVPAVPKAEVRHSDQQSSQSQLPSDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05151 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Trre1g05151 556 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 15 552 - -
Trre1g05151 556 MobiDBLite consensus disorder prediction 431 489 - -
Trre1g05151 556 MobiDBLite consensus disorder prediction 452 486 - -
Trre1g05151 556 MobiDBLite consensus disorder prediction 96 124 - -
Trre1g05151 556 MobiDBLite consensus disorder prediction 495 514 - -
Trre1g05151 556 Pfam Transcription termination and cleavage factor C-terminal 517 550 IPR026896 GO:0031124
Trre1g05151 556 Gene3D - 7 128 IPR012677 -
Trre1g05151 556 Pfam Hinge domain of cleavage stimulation factor subunit 2 177 246 IPR025742 -
Trre1g05151 556 FunFam Cleavage stimulating factor 64 15 131 - -
Trre1g05151 556 CDD RRM_CSTF2_RNA15_like 22 98 - -
Trre1g05151 556 Gene3D - 174 248 - -
Trre1g05151 556 SUPERFAMILY RNA-binding domain, RBD 15 118 IPR035979 GO:0003676
Trre1g05151 556 SMART rrm1_1 23 96 IPR000504 GO:0003723
Trre1g05151 556 MobiDBLite consensus disorder prediction 530 556 - -
Trre1g05151 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 94 IPR000504 GO:0003723
Trre1g05151 556 FunFam Related to Cleavage stimulation factor 509 551 - -
Trre1g05151 556 MobiDBLite consensus disorder prediction 499 514 - -
Trre1g05151 556 FunFam Cleavage stimulating factor 64 173 248 - -
Trre1g05151 556 Gene3D - 511 552 IPR038192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05151 Trre-Chr1 57695227 57700362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05151 24 95 Eukaryotic Initiation Factors Gene Family AT1G49760 31.944 6.72e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05151 K14407 - gmx:100794399 742.265