Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05144 ATGGAAAATATCCCACCATTGATTTACAAAAACCCAATTAGAAGAACCTCAAGAAGATCAACAATGTATCTTGGTGTAAGAAAAAGACCATGGGGAAAATATGCAGCTGAAATAAGGAATCCATATACTAAAGAGAGGCATTGGTTAGGCACATTTGACACTGCTGAAGAAGCTGCAATAGCATATGATTTTTCATCTATTAAAATTTGTGGCATTGATAATGCTAGAACTAATTTTCATTACCCTTTTGTATCTCATTCACAATTATTACTTCCTGCACCTCCACAACCTACCCCAGTGTTAGATGCAATTAGTATCCCAGAGATGAATGTTGGTTTTGATGATGATGATGATGATGATCATGAATCTCTTGTTATTGCTTCTATCTTGCAAACTTTTTCTAATTCTGGTAGTTATTCTTTATAA 426 0.3404 MENIPPLIYKNPIRRTSRRSTMYLGVRKRPWGKYAAEIRNPYTKERHWLGTFDTAEEAAIAYDFSSIKICGIDNARTNFHYPFVSHSQLLLPAPPQPTPVLDAISIPEMNVGFDDDDDDDHESLVIASILQTFSNSGSYSL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05144 141 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Trre1g05144 141 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trre1g05144 141 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Trre1g05144 141 Pfam AP2 domain 24 63 IPR001471 GO:0003700|GO:0006355
Trre1g05144 141 FunFam Ethylene-responsive transcription factor 2 21 81 - -
Trre1g05144 141 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Trre1g05144 141 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Trre1g05144 141 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Trre1g05144 141 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Trre1g05144 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05144 Trre-Chr1 57664674 57665099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05144 23 81 AP2-EREBP Transcription Factor Family AT1G12890 74.576 7.19e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g05144 AP2 3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05144 - - gmx:100816937 201.83