Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05132 ATGGCCGGCAATCCCGCAACCCCTTCCTCCACCTCTTCTCTCCACAATTTAACTTTCTCTCCCGATTTCCCCTCCCGAATTCCCCTTACTTCCGATCAGGTTAATCACTGCACCAAAGCACTCGCTCTGTTGAAGGACAAGCTCCTTAACCCTAACACTATCTCGCAAGAGTTCCTTCACTTGCAGTATAATAGGATAACTCTCAGTGAGACCACGAGAAGATGCAACGTTGCTCTTAATTCTGTTAATATCGGCAAAAATCGATATAAAGATGTTATACCATTTGACAAGAACAGGGTCATTCTTAATTCGAGTTCAGATTATAGGTCTGAGGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCTTCCACTGGAACTGTGTCTGAATTTATAGCCACGCAAGGCCCGCTGCCACACACTTATGAGGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAGGTTGGTCGACAATTACAAGACAGTGAAGTGTGGAGATTATTTTCAATCGGAGGATAGACCTAGAGAATTTGGTAATATCTCGCTTACATGTAAATGGGCAAAAACTACTGAAACTTCACTTGTGCTGCGTCATTTGGAGGTGAACCATAAAGAGGTAGAAGATACACCATTATCTGTTTTGCATATTCAGTATCCCGAGTGGCCTGACCATGGAGTTCCAAATGATACTTTAGCCGTGCGTGAAATTTTGAAAAGATTGTACCATTTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATCGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTATCTGTGTTCAGGTCTCAGCGTATTGGAATGGTTCAGACCCAGGATCAATACGTTTATTGCTATGAAGCTATCATAGATGAACTGGAAGACCTTGTATCTCAACAGTAA 999 0.4264 MAGNPATPSSTSSLHNLTFSPDFPSRIPLTSDQVNHCTKALALLKDKLLNPNTISQEFLHLQYNRITLSETTRRCNVALNSVNIGKNRYKDVIPFDKNRVILNSSSDYRSEALGYINASFISTSSTGTVSEFIATQGPLPHTYEDFWEMIIQYHCPAIVMLTRLVDNYKTVKCGDYFQSEDRPREFGNISLTCKWAKTTETSLVLRHLEVNHKEVEDTPLSVLHIQYPEWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTVSVFRSQRIGMVQTQDQYVYCYEAIIDELEDLVSQQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05132 332 CDD PTPc_plant_PTP1 115 319 - -
Trre1g05132 332 PRINTS Protein tyrosine phosphatase signature 114 121 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 PRINTS Protein tyrosine phosphatase signature 307 317 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 PRINTS Protein tyrosine phosphatase signature 132 152 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 PRINTS Protein tyrosine phosphatase signature 291 306 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 PRINTS Protein tyrosine phosphatase signature 220 237 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 PRINTS Protein tyrosine phosphatase signature 258 276 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 21 326 IPR029021 -
Trre1g05132 332 SMART PTPc_3 53 326 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Trre1g05132 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 243 315 IPR000387 GO:0016311|GO:0016791
Trre1g05132 332 ProSiteProfiles PTP type protein phosphatase domain profile. 54 324 IPR000242 GO:0004725|GO:0006470
Trre1g05132 332 Gene3D Protein tyrosine phosphatase superfamily 29 326 IPR029021 -
Trre1g05132 332 SMART ptp_7 221 323 IPR003595 -
Trre1g05132 332 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 53 326 - -
Trre1g05132 332 FunFam Tyrosine-protein phosphatase non-receptor type 12 31 332 - -
Trre1g05132 332 Pfam Protein-tyrosine phosphatase 83 322 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05132 Trre-Chr1 57544584 57549489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05132 32 330 Protein tyrosine phosphatase (PTP) family AT1G71860 71.237 2.54e-167 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05132 - - gmx:548044 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05132 1 57544584 57549489 Trre1g05132 1 57544584 57549489 ECH