Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05122 ATGGGTATCTCCAATCTTCGCTTATTTTTCTTCTCTCTGCTGAGTTTCTCTGCTATGGCGGCTGCTAAGGTCGTGCTGATTGGGAACAACACCACTCTTTCATTCGATGATATTGAAGCTAATTTCTCTCCGTCAGTTAAAGGGTCTGGAGAATATGGAGCCTTATTCTTGGCCGAGCCGCTTGATGCATGTACAGAACTTACAAATAAAGCTATACAACTTCCGAATGATAGTTCACCTTTTGTTTTGATGATTAGAGGAGGGTGTAGCTTTGAGGACAAGGTTAGGATGGCACAAAATGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATTAGAATACATGCAGTATTTGTATCAAAAGCTTCAGGTGAAATACTAATGAAATACACTGGTTTGACGAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCGATTTCATTTATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGGGCTTCTTCCCATGTTCGTGAATTTCATGGTATGAGCAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATTTTCACTTATGCTTTGGAAGATAACTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGTGTTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAGCATGATGCAAGAACGGGTCTGTCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCATCGACACCGTCATCTGTGGCATCTTCTTTCATGTCTTCTATGAGGTCATCATTTGCTTCTTCTTCTGCAATACAAATTGCTTCACAGTCGCCATCTGCTTCTCGAAACCACTCTGTAGCTAGTACCCCTTACATGCAACCATCTCTAAGGTCCTACCGCCAGTCCCCCTCCCTAAGCGTCAGCCGTAGCTCCGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTACATGTCTTCACACATTCCAAGTCCAAGCAATGGTTCAGTTAGTTTTCTCGGTTCATCCAGTCATCAGCAACATCCACTCCGTTATAGCGAGTCAGCCTCAAGCTTCTCGCCATTTGCGTCTGCCAACTCCCTTCCAGACTGTTGA 1326 0.448 MGISNLRLFFFSLLSFSAMAAAKVVLIGNNTTLSFDDIEANFSPSVKGSGEYGALFLAEPLDACTELTNKAIQLPNDSSPFVLMIRGGCSFEDKVRMAQNAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILMKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASSHVREFHGMSSRLVKAMPSLIFTYALEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKHDARTGLSDPPPSESTPLLSSTPSSVASSFMSSMRSSFASSSAIQIASQSPSASRNHSVASTPYMQPSLRSYRQSPSLSVSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYMSSHIPSPSNGSVSFLGSSSHQQHPLRYSESASSFSPFASANSLPDC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05122 441 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 158 292 - -
Trre1g05122 441 SUPERFAMILY RING/U-box 228 289 - -
Trre1g05122 441 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Trre1g05122 441 MobiDBLite consensus disorder prediction 398 441 - -
Trre1g05122 441 Gene3D - 17 153 - -
Trre1g05122 441 Pfam Ring finger domain 234 277 IPR001841 -
Trre1g05122 441 Pfam PA domain 81 142 IPR003137 -
Trre1g05122 441 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 156 - -
Trre1g05122 441 SMART ring_2 235 276 IPR001841 -
Trre1g05122 441 SUPERFAMILY PA domain 81 145 IPR046450 -
Trre1g05122 441 CDD PA_C_RZF_like 20 163 IPR044744 -
Trre1g05122 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Trre1g05122 441 MobiDBLite consensus disorder prediction 326 382 - -
Trre1g05122 441 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 194 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05122 Trre-Chr1 57419455 57423120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05122 21 440 C3H Transcription Factor Family AT1G22670 48.821 6.00e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05122 K15692 - gmx:100791248 625.55