Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05112 ATGCCAACAACAACATCAACAACAACGTTTGGTGGTGTAGAAACTTCAAATGCAAACTCATCCAAACATACCCCCCAAGAATCTCGTGACCTTCCTCCTTTACTCTCTTCTTCTTACCCAATCACTCTTAAGTTTATGGACGTGGGATATCGATTGAAGATAGAGAGCAAAAAAGGAAGCGGAGGGTGCATCAAGAATTTCTTTACACCACTCTCATCATCACCGTCTGATCAAAGATCAACGCAAGAGCGAATCATACTTAACGGGGTAACGGGTATAGCATACCCAGGAGAGATCCTAGCCATTCTAGGTCCATCAGGAAGCGGAAAATCAACGCTCCTAAATTCACTTGCAGGAAGACTTCATGGAAACGGCCTCACAGGAACAATTCTCGCTAACTCATCAAAACTCAACAGAACGGTTCTCCGTCGAACCGGGTTCGTTACACAAGACGATATTCTCTACCCTCATTTAACCGTTCGCGAGACGCTGATCTTCTGCTCTATGCTTCGTCTCCCGAGAAAACTTACTCGGGAAACGAAGATAGCAGCAGCTGAATCAGCGATCGCGGAACTTGGATTAACGAAGTGTGAGAACACTATAATTGGTAACAGTTTCATTCGCGGTGTTTCTGGTGGAGAGAGGAAGCGAGTGAGTATAGCTCATGAGATGTTAGTAGATCCGGCGTTATTGATCTTGGATGAGCCTACATCTGGATTGGATTCAACGGCGGCGCATCGGCTAGTGTCGACGCTGGGATCGTTGGCGAGGAAGGGGAAGACGGTGATAACGTCGGTGCATCAGCCATCGAGTCGTGTCTACCAGATGTTTGATAAAGTGATTGTGTTATCAGAAGGTCAGTGTATGTACTACGGGAAAGGAACCGACGCTATGAGGTATTTTGAGTCGGTTGGATTCGCGCCATCATTTCCGGTAAATCCGGCGGATTTTCTGCTCGATCTTGCTAACGGTGTTTGCCATGCAGATGGTGTAAGTGAAAAAGATAGACCAAACATAAAGCAAAATCTAATTCATTCATACAACACAGTACTAGGTCCAAAGGTGAAAGCACTCTGTATGGACACAGCTAATGTTTCAACAAAAGACTCTCACACTTCAAGAAACAACTCTTCAAAAGAACATAGATATAATGACAGATTCACCCTCTTTGATTGGTTTTACCAATTCAATATTCTCCTCCAAAGAAGCCTCAAAGAAAGAAAATATGAATCATTCAACACACTAAGAGTTTTTCAAGTTGTTGCTGCTGCATTACTAGCTGGTTTAATGTGGTGGCATTCAGATTATAAAAACATTCAAGATAGACTTGGATTACTCTTCTTCATTTCAATCTTTTGGGGTGTATTCCCATCTTTTAATTCTGTTTTCGCATTCCCTCAAGAACGCGCAATCTTTGTTAAAGAAAGAGCTTCTGGTATGTACACATTATCATCCTATTTCATGGCTAGAATTGTTGGTGACTTACCAATGGAGCTTCTTCTTCCAACAGTTTTCCTTATCATTACCTATTGGATGGGTGGATTAAAGCCTGATTTGTTATCATTTCTCTTGACTCTATTAGTTGTTCTCGGATTCGTGCTTGTGTCACAAGGTCTTGGACTTGCTTTAGGTGCTGCAATTATGGATGCTAAACAAGCTTCAACTGTTGCAGCAGTTACAATGCTAGCATTTGTTTTAACAGGTGGATACTATGTCCATAAAGTTCCATCATGTGTAGCTTGGATCAAATACATATCGACGACATTCTATAGTTACCGGCTTTTGACTAGAATTCAATACGGCGATGGCAAGAAAATCGCAAATCTATTAGGCTGCAATCATGATGGTATTACTAGTGATGGAGCTAGTTGCAGATTTCTCGATGAAGATGTGGTCGGTCAGATTGGCGCAATGGGATGCATTGGAGTGTTGTTTTTCATGTTTGTGTTTTACAGATTAGTCGCTTACCTTTGTTTGAGGCGCATCAAGAGTTGA 1995 0.4211 MPTTTSTTTFGGVETSNANSSKHTPQESRDLPPLLSSSYPITLKFMDVGYRLKIESKKGSGGCIKNFFTPLSSSPSDQRSTQERIILNGVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHGNGLTGTILANSSKLNRTVLRRTGFVTQDDILYPHLTVRETLIFCSMLRLPRKLTRETKIAAAESAIAELGLTKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAHRLVSTLGSLARKGKTVITSVHQPSSRVYQMFDKVIVLSEGQCMYYGKGTDAMRYFESVGFAPSFPVNPADFLLDLANGVCHADGVSEKDRPNIKQNLIHSYNTVLGPKVKALCMDTANVSTKDSHTSRNNSSKEHRYNDRFTLFDWFYQFNILLQRSLKERKYESFNTLRVFQVVAAALLAGLMWWHSDYKNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELLLPTVFLIITYWMGGLKPDLLSFLLTLLVVLGFVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCVAWIKYISTTFYSYRLLTRIQYGDGKKIANLLGCNHDGITSDGASCRFLDEDVVGQIGAMGCIGVLFFMFVFYRLVAYLCLRRIKS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05112 664 Pfam ABC transporter 88 238 IPR003439 GO:0005524
Trre1g05112 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 303 IPR027417 -
Trre1g05112 664 Pfam ABC-2 type transporter 267 376 IPR043926 GO:0140359
Trre1g05112 664 Pfam ABC-2 type transporter 394 599 IPR013525 GO:0016020|GO:0140359
Trre1g05112 664 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g05112 664 SMART AAA_5 96 287 IPR003593 GO:0016887
Trre1g05112 664 Gene3D - 78 304 IPR027417 -
Trre1g05112 664 FunFam ABC transporter G family member 22 75 304 - -
Trre1g05112 664 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 310 IPR003439 GO:0005524
Trre1g05112 664 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 16 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05112 Trre-Chr1 57330415 57340238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05112 67 409 Calmodulin-binding Proteins AT2G36910 25.132 1.08e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05112 K05681 - gmx:100812367 1067.76