Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05109 ATGGGAATTTCTTCACAACCTTCTTTTGATGCACTCACTTTGAAAGATGTTCTTGATCAAGGAAGTGATGAAGTAAACAACAATAATTCATCATATTTGTGGAGCAAAGTTTTGGATGAACAAGCCAAGAAAAGGGTGAAAAGATCAAGAAGAATTTTCATGAAGAGAAGGATTGGTTCTAGAAGAGGTTCATATGGAATTCAAAGACGTGTAAGAACATTGAAGAGACTTATACCAAATAGTGATCAATCTATTGGGTTAGATGGACTTTTTAGAGAGACAGCTAATTATATATTGTCTTTGGAAAATAGAGTGAGAGTTATGAAGGTTATGGTTGAGGTATTGAATGGAAGTGATTAA 360 0.3361 MGISSQPSFDALTLKDVLDQGSDEVNNNNSSYLWSKVLDEQAKKRVKRSRRIFMKRRIGSRRGSYGIQRRVRTLKRLIPNSDQSIGLDGLFRETANYILSLENRVRVMKVMVEVLNGSD 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05109 119 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 31 115 IPR044660 GO:0006355
Trre1g05109 119 CDD bHLH_AtIBH1_like 56 112 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05109 Trre-Chr1 57281070 57281429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05109 45 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 48.193 2.05e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05109 - - ccaj:109814433 133.65