Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05105 ATGGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTATCTCAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGATATACAAGATAGATGCAAATTAGGTTATGAGCAACAAAATGAGTGGTACTTTTTCAGTCACAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGAGCCACTGCTGCTGGATTCTGGAAAGCTACTGGAAGAGATAAAGCTGTTACTTCCAAAAACAGAATTATAGGAATGAGGAAGACTCTTGTTTTTTATAAGGGACGTGCCCCTAATGGAAGGAAAACTGATTGGATTATGCATGAATATAGACATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTTAAGAAGCCAAGTCCAAGTCATAGGCCAGGTTATGAACCATGGTATAGTAATAGTAATCAACATCAACATCAACAACCACAATATTTTGGAGATGATCAAAGCTATGCAACTACAAGACCATTATCAATCACAGATATTTTGCACGAAAATCGTTTACTCCTTCAACATAATAATCCTGCAGCTGAAGAAGGTACAAGTTTTAGTCACCACTTTAACAATGATCAACAATTTCTATCAAACCAAACTACTCTTGTTATGGACAACAAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAAGTTTTGCAATCAAAGAATCTACTCAAAATGGATTCATCACAAATGAAGATCAATGCAGTGATGAAAGGAGCAACAATGGATCACAAGTAATTGATTGGAAAAGTTTGGATAATTTGTTCACTTCTTCACATCAATTTACAGATACAACTAATTACTTTTCAAATCCATTGATGATGATACCTCATAATCAGCATGAGCTACAATCACAAAATCAAGCTAATCATATATTAGGATGCTTTCCAGATTCATAA 1020 0.3559 MDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNSNQHQHQQPQYFGDDQSYATTRPLSITDILHENRLLLQHNNPAAEEGTSFSHHFNNDQQFLSNQTTLVMDNKQLIELPQLDSPTTSFAIKESTQNGFITNEDQCSDERSNNGSQVIDWKSLDNLFTSSHQFTDTTNYFSNPLMMIPHNQHELQSQNQANHILGCFPDS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05105 339 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Trre1g05105 339 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Trre1g05105 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 261 - -
Trre1g05105 339 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Trre1g05105 339 MobiDBLite consensus disorder prediction 161 180 - -
Trre1g05105 339 FunFam NAC domain-containing protein 16 160 - -
Trre1g05105 339 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Trre1g05105 339 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05105 Trre-Chr1 57253760 57255628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05105 3 339 NAC Transcription Factor Family AT1G71930 53.026 3.51e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g05105 NAM 5.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05105 - - gmx:100812904 493.426