Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05099 ATGGGAGATTCCTACTTTGCTAAAGAGGATAACCAAATTAGTGTTTCCTCTGAACAAATTGAGGATAGTGCTATTCTTTCAGCAATGATAGCTACCACTAATCTTGTTTATCCAGCAGTGTTAAATGCTGCTATTGATCTCAATTTATTTGAGATTATAGCTAAGGCAACACCACCCGGTGCTTTCATGTCACCATCTAAAATTGCTTCTAAGTTACCGCCTTCAGCCCAACATTCGGATTTGTCTAATAGGCTCGACCGAATGTTGCGTTTGCTTACTAGTTATTCCATTCTTACTTCTGCCACCCGAACTACCGAGGATGGTAGCAACGAGAGAGTTTACGGACTCTCAATGGTCGGGAAATACTTTGTCCCCGATGAAAATAGAGGATCCTTGGATTCATTCCCTACATTTATGTTTTATCCTGCAATGTTACAAGTTTGGATGAACTTTAAGGAAGCAGTGGTTGCTGAAGACATTGATTTGTTCAAGAACATTCATGGAGTGACAAAGTATGAATACATGGGAAAGGATAAAAAAATGAACCAAATCTTTAACAAGTCAATGGTTGATGTTTGTACAACAAAGATGAAAAGCATGCTTGAAACATACAATGGATTTCAAGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTCAAAATGATTATATCTAAGCACCCTTCAATAAAGGGAATTAATTTTGATCTACCCCAAGTGATTGAAAATGCACCACCACTTCCGGGCATTGAGCATGTTGGAGGGGATATGTTCGCAAGTGTTCCACAGGGTGATGCCATGATACTAAATAATGTGTGTCACAATTGTCACAAAGCTCTGCCACCAAATGGAAAAGTGATTGTTGTGGAGTTTATACTTCCAGAGGAACCAACAACAACTGAAGAATCTAAACTAGTTTCAACTCTTGACAATCTCATGTTCATCACAGTTGGTGGAAGGGAAAGAACTGAGAAACAATATGAGAAATTGGCCAAATTCTCTGGATTTTCTAAATTTCAAGTGGCTTGTCGTGCTTTCTCAAGTTTAGGTATCATGGAGTTTTATAAATGA 1083 0.3841 MGDSYFAKEDNQISVSSEQIEDSAILSAMIATTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSKIASKLPPSAQHSDLSNRLDRMLRLLTSYSILTSATRTTEDGSNERVYGLSMVGKYFVPDENRGSLDSFPTFMFYPAMLQVWMNFKEAVVAEDIDLFKNIHGVTKYEYMGKDKKMNQIFNKSMVDVCTTKMKSMLETYNGFQGISTLVDVGGGSGQNLKMIISKHPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVPQGDAMILNNVCHNCHKALPPNGKVIVVEFILPEEPTTTEESKLVSTLDNLMFITVGGRERTEKQYEKLAKFSGFSKFQVACRAFSSLGIMEFYK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05099 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 355 IPR029063 -
Trre1g05099 360 SUPERFAMILY "Winged helix" DNA-binding domain 23 127 IPR036390 -
Trre1g05099 360 PIRSF O-mtase 5 360 IPR016461 GO:0008168
Trre1g05099 360 FunFam Caffeic acid O-methyltransferase 126 360 - -
Trre1g05099 360 PANTHER O-METHYLTRANSFERASE 31 350 IPR016461 GO:0008168
Trre1g05099 360 Gene3D - 36 200 IPR036388 -
Trre1g05099 360 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Trre1g05099 360 FunFam Caffeic acid 3-O-methyltransferase 7 123 - -
Trre1g05099 360 Gene3D Vaccinia Virus protein VP39 182 349 IPR029063 -
Trre1g05099 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 360 IPR016461 GO:0008168
Trre1g05099 360 Pfam O-methyltransferase domain 148 341 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05099 Trre-Chr1 57186985 57189218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05099 21 360 Monolignol Biosynthesis Gene Families AT5G54160 44.759 6.31e-99 295