Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05097 ATGGGAGATTCGTATTTTACTAAAGAGGATAACAAAATTAGTGCTTCCTCAGAACAAACAGAGGACGGTGCTTGTCTTTTAGCAATGGTACTTACCTCTAATCTTATTTATTCAGCAGTGTTAAATGCTGCTATTGATCTTAATTTATTTGAGATTATAGCTAAGGCAACACCACATGCTACTTTTATGTCACCAACAGAAATTGCTTCTAAATTGCCACCATCGAGCCAACACTCGGACTTGCCTAATAGGCTCGACAGAATGTTGCGTTTACTTGCTAGTTATTCTATTCTTACTTCTTCTACTCGAACAACTGAGAATTGTATTGAGAGAGTTTACGGTCTCTCAATGGTCGGAAAATACCTTGTCCCCGATGAAAGTAGAGTCACTATGGCATCAATTACCGCATTTCTATGTCATCCTGCATTGTTACAAGTTTGGGTGAACTTTAAGGAAGCAGTGGTTGCTGAAGACATTGATTTGTTCAAGAAAATTCATGGAGTGACAAAGTACGAATACATGGGTAAGGATAAAAAAATGAACCAAATTTTTAACAAATCAATGGTTGATATGTGTGCAATAGAGATGAAAAGAATGCTCGAAATATACAATGGATTTGAGGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTCAAAATGATAATTTCCAAGTACCCATTAATTAAGGGAATTAATTTTGATCTGCCTCAGGTTATTGAAAATGCACCGCCAATTTTAGGGATTCAGCATATTGGAGGAGATATGTTTGGAAGCATTCCGCATGGTGATGCCATGATATTAAAGGCTGTATGTCATAATTGGTCAGATGAAAAATGCACAGAAATTTTAAGCAAATGTCACAAAGCTCTGTCATCAAATGGGAAGGTGATTCTAGTGGAGTTCATATTGCAAGAAGAACCAACACAAACCGAAGAATCTAAATTTGTTTCACTTCTTGATAATCTCATGTTTATCACAGTTGGTGGAAGAGAAAGAACTGAGAAACAATATGAGAAATTGGGTAAACTGTCTGGATTTTCCAAATTTCAAGTTGCTTGCCGTGCTTTCTCCTGTTTCGGAGTCATGGAATTTTATAAATAA 1116 0.3647 MGDSYFTKEDNKISASSEQTEDGACLLAMVLTSNLIYSAVLNAAIDLNLFEIIAKATPHATFMSPTEIASKLPPSSQHSDLPNRLDRMLRLLASYSILTSSTRTTENCIERVYGLSMVGKYLVPDESRVTMASITAFLCHPALLQVWVNFKEAVVAEDIDLFKKIHGVTKYEYMGKDKKMNQIFNKSMVDMCAIEMKRMLEIYNGFEGISTLVDVGGGSGQNLKMIISKYPLIKGINFDLPQVIENAPPILGIQHIGGDMFGSIPHGDAMILKAVCHNWSDEKCTEILSKCHKALSSNGKVILVEFILQEEPTQTEESKFVSLLDNLMFITVGGRERTEKQYEKLGKLSGFSKFQVACRAFSCFGVMEFYK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05097 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 371 IPR016461 GO:0008168
Trre1g05097 371 FunFam Caffeic acid O-methyltransferase 125 371 - -
Trre1g05097 371 FunFam Caffeic acid 3-O-methyltransferase 7 122 - -
Trre1g05097 371 Gene3D Vaccinia Virus protein VP39 181 360 IPR029063 -
Trre1g05097 371 SUPERFAMILY "Winged helix" DNA-binding domain 22 126 IPR036390 -
Trre1g05097 371 PIRSF O-mtase 5 371 IPR016461 GO:0008168
Trre1g05097 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Trre1g05097 371 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Trre1g05097 371 Gene3D - 36 199 IPR036388 -
Trre1g05097 371 PANTHER O-METHYLTRANSFERASE 28 361 IPR016461 GO:0008168
Trre1g05097 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05097 Trre-Chr1 57168045 57172524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05097 20 361 Monolignol Biosynthesis Gene Families AT5G54160 47.674 3.51e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05097 - - ag:AAB48059 624.394