Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05095 ATGGGAGATTCATATTTTACTAAAGAGGATAACAAAATTAGTGCTTCCTCAGAACAAACTGAGGACAGTGCTTGTCTTTCAGCAATGGTACTTATCACTAATCTTGTTTATTCGGCAGTTTTTAATGCTGCTATTGATCTTAATTTATTTGAGATTATAGCTAAGGCAACACCACCTGCTGCTTTCATGTCACCAACAGAAATTGCTTCTAAATTGCCACCATCGAGCCAACACTCGGACTTGCCTAATAGGCTCGACCGAATGTTGCGTTTGCTTGCTAGTTATTCTATTCTTAATTCTACTACTCGAACCTCCGAGAATGGTATTGAGAGAGTTTACGGTCTTTCAATGGTTGGAAAATACTTTGTCCCTGATCAAAGTGGAGTCTCATTGGCATCAATGACCGCATTTCTATGTTATCCTCCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGATTAATGAAAACATTAATTTGTTCAAGAACACTCATGGAGTAACAAAGTATGAATACATGGAAAAGGATAAAAAAATGAACCAAAAATTTAACAAGTCAATGGTTGGTGTTTGTGCAACACAAATGAAAAGAATACTCGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTCAAAATGATTATATCTAAGTACCAATCAATAAAAGGAATTAATTTTGATCTGCCTCAGGTTATTGAAAATGCACCACCAGTTTCGGGCATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATGATTCTCAAGGCTGTGTGTCACAATTGGTCAGATGAGAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCTCTCTCACCAAATGGGAAGGTGATTGTTGTGGAGTTCATATTGCCAGAGGAACCAACAGAAACTGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTCATTACAGTTGGTGGAAGACAAAGAACTGAGAAACAATATGAGAAATTGGCCAAATACTCTGGATTTTCCAAATTTCAAGTTGTTTGTCGTGCTTTCTCCAGTTTAGGAGTGATGGAATTTTATAACTAA 1116 0.3674 MGDSYFTKEDNKISASSEQTEDSACLSAMVLITNLVYSAVFNAAIDLNLFEIIAKATPPAAFMSPTEIASKLPPSSQHSDLPNRLDRMLRLLASYSILNSTTRTSENGIERVYGLSMVGKYFVPDQSGVSLASMTAFLCYPPLLQVWMNFKEAVINENINLFKNTHGVTKYEYMEKDKKMNQKFNKSMVGVCATQMKRILEIYTGFEGISTLVDVGGGSGQNLKMIISKYQSIKGINFDLPQVIENAPPVSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIVVEFILPEEPTETEESKLVSTLDNLMFITVGGRQRTEKQYEKLAKYSGFSKFQVVCRAFSSLGVMEFYN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05095 371 FunFam Caffeic acid 3-O-methyltransferase 7 122 - -
Trre1g05095 371 SUPERFAMILY "Winged helix" DNA-binding domain 21 126 IPR036390 -
Trre1g05095 371 PIRSF O-mtase 5 371 IPR016461 GO:0008168
Trre1g05095 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 371 IPR016461 GO:0008168
Trre1g05095 371 Gene3D Vaccinia Virus protein VP39 123 371 IPR029063 -
Trre1g05095 371 CDD AdoMet_MTases 211 308 - -
Trre1g05095 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Trre1g05095 371 PANTHER O-METHYLTRANSFERASE 31 354 IPR016461 GO:0008168
Trre1g05095 371 Gene3D - 5 122 IPR036388 -
Trre1g05095 371 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Trre1g05095 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 368 IPR029063 -
Trre1g05095 371 FunFam Caffeic acid O-methyltransferase 125 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05095 Trre-Chr1 57127361 57130244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05095 20 361 Monolignol Biosynthesis Gene Families AT5G54160 48.547 1.66e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05095 - - ag:AAB48059 639.417