Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05088 ATGATTAATATCTCCAATCTTCTTAATCACTCTGATTGGAATCCCAACAAAAACTCCAATCCATGTTCATGGAAAGGTGTCACTTGTGACAATACCAGTTCATCTGTCATCAAAATTGTCCTACATGGTTCTTCTCTCTCTTCACAATCTCTTTCTGTTTTTTGCAAAATTGAAACTTTGCAACACCTTGATGTCTCTAATAACCATCTGAACTCTATCCCAGATGGGTTTATTTCTGCATGTGGAAAAATTCAGAGTTTAAAGCTTTTAAATTTCAGTGAAAATATGTTAAGTGGTTTTTTGCCTACTTTTGATGGTTTTGGTAAATTGGAATCACTTGACATGTCTTTGAATAATTTGAGAGGGAGCATTGATAAGCAGTTAGATGGATTAGTTAGTCTCAAGTTGCTTAATCTCGGTTACAATAACTTCACTGGGAAAATTCCTACTAATTTGGGAAGGTCCATGGTTTTGGAGCAGCTTTTGCTTTCAAACAATGGTTTTGAAGGAACAATCCCTGATCAAATTTTGAGTTACAAAAATTTGACTGTGATTGATTTTAAGGCAAATCTTCTTTCAGGGTCTATTCCTTTAAATATTGGAGATCTTTCCAAATTGAAAACTTTGAGTCTTTCCTCTAATAGACTAAGTGGTAAAATCCCAATGTCAATCATGAATATCACAACTCTAGTAAGATTTGCAGCTAATTTAAATTATTTTACTGGTGCTATTCCTCTAGGAATTACAAAATTTCTACTGAGTTTGGATCTTAGTTATAATAAGTTATCTGAGTCCATTCCAGAAGGCCTTTTATCTCCATCAAAGCTTATGCTTGTAGATTTGTCCTTTAACAAGTTAACAGGTCATGTGCCTGCAAATATTTCAACTAGTTTAGTTAGGTTGAGATTGGGGGGAAATTCTCTGACAGGAGAGGTTCCTTCGGGTATTTGTGAAGCCATTCGTGACAACCAATTGACGTACATGGAACTGGACAATAATAAGTTGACAGGTTTGATACCTCCTGGATTAGGTTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTGGTAACCAATTGACTGGTGCATTGCCACCAGAAATTGGTAATCTTAGCTATCTTCAAGTTTTGCAGCTTCAAACGAACAAGCTCAATAGTACTATCCCGATTCAAATTTCCAAACTTCAAAAGTTGTCTACCTTGAATTTGAGCTATAATTCTTTTGATGGACCAATTCCGTCTGATATGCCAATCAACCTTACACTCCTTAACTTGCAAGGGAACAATCTCAACGGGTCTATACCGTCGTCCATTGGAAACTTGCAAAATCTTTTAGATGTTCAACTTGGAGAAAATCAGCTAAGCGGTGATATTCCAAAAATGCCTTCGAGTCTACAAATTGGATTGAATCTCAGTAGCAATCACTTTAGTGGAGTTATTCCAAGTAGTTTTGGTGATTTGGTTAACCTAGAAATTTTGGATCTCTCAAATAACAGCTTCTCCGGTGCAATTCCTGTGTCTCTAACTAAAATGTCGGCATTGACACAGTTGCAACTATCAAACAATGATCTATCAGGTGACCTTCCACTGTTTCCTTCATATGTTAAAGTTGATATAGAAGGAACCAATGTCAAGAATAATAGTAATGTATCATCCGACATTTTTCCAAGAGCAGAAAAAAAGAAAGGGAATTCTGTTGTTGCCGCTGTTCTTATTGCAATTGCTGCTGCTATTTTTGTGGTTTGCATGGTCACCCTTCTGGTTGTATTGGTTTCACGGCACTATTGCAAGGTTAACGATGAACGAGTACAGTCAAATGAAGTTGAAAATCTTGACCTTCCTCAGGTCATCCAGAGTAATTTGTTAACTCCAAATGGAATCCACAGATCAAACATTGATCTCTCCAAGGCCATGGAAGCTGTTGCCGAACCGTCAAACGTAACTCTAAAAACCAAGTTTTCGACTTACTATAAGGCTGTTATGCCATCTGGCTCAATCTATTTTGCCAAGAAGCTGAACTGGTGTGACAAGATATTTCCAGTGAGTAGTGTTGATAAATTTGGGAAAGAGTTGGATGCATTGGCAAAGTTGAACAATTCAAATGTGATGATTCCTCTAGGCTATATCGTGTCCACTGACAATGCTTATGTATTATATGAGTTTGTGTCGAACGGCTCTCTCTTCGATGTGCTTCACGGGAGCATGGAAAACTCTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGTGTGGCTCAAGGTATCTCTTTTCTGCATGGATTTGCATCTGGTCCGATACTTCTCCTTGATTTATCAAGTAAGAGTATCATGCTGAAATCACTCAAGGAACCTCTAGTCGGCGATATTGAACACTACAAGGTGATTGATCCTTCAAAGAGTACCGGGAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTACATTCCTCCAGAGTATGCATACACAATGAGAGTAACAGTGGCAGGAAATGTGTATAGCTTTGGTGTCATTCTACTGGAATTGCTAACAGGCAAATCTGCGGTGACCGAGGGAACTGAATTGGTGAAGTGGGTTTTGCGTAATTCAAGAAATCAAGATCACATTCTTGATCCCAATGTTAGTAGAACATCACAAGCTGTTAGAAACCAAATGCTTGCAATTCTAGAGATTGCTCTTGTTTGTGTTAGCACATCTCCTGATGCAAGACCAAAGATGAAGACTGTGCTAAGAATGTTGCTGAATGCCAGATAG 2745 0.3814 MINISNLLNHSDWNPNKNSNPCSWKGVTCDNTSSSVIKIVLHGSSLSSQSLSVFCKIETLQHLDVSNNHLNSIPDGFISACGKIQSLKLLNFSENMLSGFLPTFDGFGKLESLDMSLNNLRGSIDKQLDGLVSLKLLNLGYNNFTGKIPTNLGRSMVLEQLLLSNNGFEGTIPDQILSYKNLTVIDFKANLLSGSIPLNIGDLSKLKTLSLSSNRLSGKIPMSIMNITTLVRFAANLNYFTGAIPLGITKFLLSLDLSYNKLSESIPEGLLSPSKLMLVDLSFNKLTGHVPANISTSLVRLRLGGNSLTGEVPSGICEAIRDNQLTYMELDNNKLTGLIPPGLGSCKKLALLNLAGNQLTGALPPEIGNLSYLQVLQLQTNKLNSTIPIQISKLQKLSTLNLSYNSFDGPIPSDMPINLTLLNLQGNNLNGSIPSSIGNLQNLLDVQLGENQLSGDIPKMPSSLQIGLNLSSNHFSGVIPSSFGDLVNLEILDLSNNSFSGAIPVSLTKMSALTQLQLSNNDLSGDLPLFPSYVKVDIEGTNVKNNSNVSSDIFPRAEKKKGNSVVAAVLIAIAAAIFVVCMVTLLVVLVSRHYCKVNDERVQSNEVENLDLPQVIQSNLLTPNGIHRSNIDLSKAMEAVAEPSNVTLKTKFSTYYKAVMPSGSIYFAKKLNWCDKIFPVSSVDKFGKELDALAKLNNSNVMIPLGYIVSTDNAYVLYEFVSNGSLFDVLHGSMENSLDWASRYSIAVGVAQGISFLHGFASGPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTVAGNVYSFGVILLELLTGKSAVTEGTELVKWVLRNSRNQDHILDPNVSRTSQAVRNQMLAILEIALVCVSTSPDARPKMKTVLRMLLNAR 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05088 914 ProSiteProfiles Protein kinase domain profile. 641 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05088 914 Gene3D Phosphorylase Kinase; domain 1 605 720 - -
Trre1g05088 914 Pfam Protein tyrosine and serine/threonine kinase 683 910 IPR001245 GO:0004672|GO:0006468
Trre1g05088 914 SMART LRR_typ_2 486 510 IPR003591 -
Trre1g05088 914 SMART LRR_typ_2 370 394 IPR003591 -
Trre1g05088 914 SMART LRR_typ_2 131 155 IPR003591 -
Trre1g05088 914 SMART LRR_typ_2 57 80 IPR003591 -
Trre1g05088 914 SMART LRR_typ_2 249 273 IPR003591 -
Trre1g05088 914 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 609 720 - -
Trre1g05088 914 SUPERFAMILY Protein kinase-like (PK-like) 652 910 IPR011009 -
Trre1g05088 914 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 292 561 - -
Trre1g05088 914 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 910 - -
Trre1g05088 914 Pfam Leucine rich repeat 59 120 IPR001611 GO:0005515
Trre1g05088 914 Pfam Leucine rich repeat 468 523 IPR001611 GO:0005515
Trre1g05088 914 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 721 914 - -
Trre1g05088 914 Gene3D Transferase(Phosphotransferase) domain 1 721 914 - -
Trre1g05088 914 SUPERFAMILY L domain-like 253 530 - -
Trre1g05088 914 PRINTS Leucine-rich repeat signature 486 499 - -
Trre1g05088 914 PRINTS Leucine-rich repeat signature 60 73 - -
Trre1g05088 914 Pfam Leucine rich repeat N-terminal domain 10 30 IPR013210 -
Trre1g05088 914 Gene3D Ribonuclease Inhibitor 418 464 IPR032675 -
Trre1g05088 914 Gene3D Ribonuclease Inhibitor 465 548 IPR032675 -
Trre1g05088 914 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 151 244 - -
Trre1g05088 914 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 1 150 - -
Trre1g05088 914 ProSiteProfiles Leucine-rich repeat profile. 59 80 IPR001611 GO:0005515
Trre1g05088 914 SUPERFAMILY L domain-like 21 313 - -
Trre1g05088 914 Gene3D Ribonuclease Inhibitor 3 50 IPR032675 -
Trre1g05088 914 Gene3D Ribonuclease Inhibitor 51 417 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05088 Trre-Chr1 57083564 57086475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05088 110 914 Receptor kinase-like Gene Family AT2G41820 38.876 1.33e-149 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g05088 PK_Tyr_Ser-Thr 4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05088 - - gmx:100796647 1147.88