Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05082 ATGCTACAAGAGCTTATTCCACACAGCGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAATTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCGGGAAAATTGATGCCATGGAGAAATAATGACCGGCCAGCAGAAAGTTTCCAACCTCGTGGCACAAACAGCGGGCCTAATCCATCTCTAACATTGTTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATTCATGGGGGCGCCCATAATATGGAATCTGGCTTGACCACACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTTCATCCCAAATTGGTGGTTCTGGTGGAGCAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACACGATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTCAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAACATATCAAGTGTGTACTCAAAAGGGTGA 609 0.4138 MLQELIPHSDQKRDKASFLLEVIEYIHFLQEKVHNYEGSFQSWNNEPGKLMPWRNNDRPAESFQPRGTNSGPNPSLTLLFASKIDEKNTTISPTIHGGAHNMESGLTTPTAFKTMDHQSGIMNKALPIPISSQPNFFTSSQIGGSGGAVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAINISSVYSKG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05082 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 50 IPR036638 GO:0046983
Trre1g05082 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 29 IPR011598 GO:0046983
Trre1g05082 202 Gene3D - 1 49 IPR036638 GO:0046983
Trre1g05082 202 MobiDBLite consensus disorder prediction 53 74 - -
Trre1g05082 202 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 202 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05082 Trre-Chr1 57042175 57043101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05082 1 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 37.624 1.20e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g05082 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05082 - - gmx:100808016 319.701