Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05080 ATGAATCCGACAGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTGGTCCCTCCTGGGAATGGATTGCCGACAAATTTACCCTTGGATCCATCCTCGTTCTTTGGGGTCGGTATTGAAACACCTTTCAAAGAAATCAACCAACCCTCTGCAACTCGGTGCGTGATTCCAGGTGAATCTAAAAAAGATGTTAAGATTGCGGATCAGGAAACGAGTAAACTCGAAGATTGGGATCCCAGTGCTATGTTGAATAACCTTTCGTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATGTAGTGCATATGATTGTTAATAAGAAGTGTCAGCCTTTCGAACAACCTCGTGAACTCGTAACTCAGGAACAGCAACTCATCACAGCTGATCTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGCACAAGTAGTGGTATTCAGCCACAAAATAATTGTGGAAACAAATTGTTTGATCATTCAATTCAGAATGATGTACCTAATAAATGTGAAATGGAGCAAAACCATAATATGGAAGAACATGAACATAAAGACGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCATACGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCTCACACGCATTTCTGTACGATATGTGGCAAGGGGTTCAAGAGGGATGCAAATCTCCGAATGCACATGCGAGGTCATGGTGATGAGTACAAAACTCCAGCAGCCCTTGCAAAGCCACATAAAGAAACCGGGTCCGAACCAAAGCTTATCAAGAGGTATTCGTGCCCTTACGGTGGCTGCAAGCGTAATAAGGATCACAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGTTACACTTGCAGCAGATGCCACACGAAAAAGTTTTCGGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAGTGGCTGTGTTCATGCGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGTCATACCCCAGCTATTCCTTTAGAAGAAAACAAAGGACTTGCCGAGCCACCTGATCGATGCGACGTCAAAGAAAACAGCACTATGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTCCAAGTGAAAATGGAGTTGATAACATCATGGATGTGAAAGGTAATATTGATGATCCTATCAATTACTTCTCATCTTTGAACTTCGAAGGTTGTAACTTTGGCGCGTTTAATGAATTCTCACAACCTCCATTCGAAGATTCAGACAGCTCTTTCTCTTTTCTCATGTCGGGATCGTTTAATTATGCTGCTAAGCCTGGTGGTGAATCATGTTCTGACAATCTGTAA 1410 0.4177 MNPTGSLCANNWARSSSLVPPGNGLPTNLPLDPSSFFGVGIETPFKEINQPSATRCVIPGESKKDVKIADQETSKLEDWDPSAMLNNLSFLEEKIHQLQDVVHMIVNKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGTSSGIQPQNNCGNKLFDHSIQNDVPNKCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEENKGLAEPPDRCDVKENSTMVGSMNFCFGSNPPSENGVDNIMDVKGNIDDPINYFSSLNFEGCNFGAFNEFSQPPFEDSDSSFSFLMSGSFNYAAKPGGESCSDNL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05080 469 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 68 441 IPR044300 GO:0010044|GO:0010447
Trre1g05080 469 SMART c2h2final6 217 239 IPR013087 -
Trre1g05080 469 SMART c2h2final6 266 299 IPR013087 -
Trre1g05080 469 SMART c2h2final6 304 326 IPR013087 -
Trre1g05080 469 SUPERFAMILY beta-beta-alpha zinc fingers 215 242 IPR036236 -
Trre1g05080 469 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Trre1g05080 469 Gene3D Classic Zinc Finger 201 270 - -
Trre1g05080 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05080 Trre-Chr1 57037868 57039376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05080 185 467 C2H2 Transcription Factor Family AT1G34370 70.588 2.43e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g05080 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05080 - - gmx:100170687 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05080 1 57037868 57039376 Trre1g05080 1 57037868 57039376 ECH