Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05077 ATGGAAGATTCAGAGGAAGATGAGCTTCTGAATCTTAGCCTTTCATTCAATAGAGAAAGAAAAAACAAAGGAAAAACCATCACAAGAGAAAACAACAATGTTTCTATGATGAGTAGTACTAATAGAAACCCCTATGAAGGCTATGAAGGAAAAATCTTTAGACTACTTCAAATGAGAGAACAAATGCTAAGAAAAAACACTCTCAACATTGAAGATTCAAATGGTCTTCCAATAATTCACTTACTCCTCACAACAGCTACTTCAGTCGATGAAAACAACTTCGATTCATCACTCGAAAACCTAACCGATCTTTACCAAATTGTTTCATTAACCGGCGATTCAGTTCAACGAGTTGTGGCCTATTTCACCGATGGTTTAACCGCGAAACTCCTCACAAAAAAATCACCATTCTACGAAATGTTGATGGAAGAACCTACAATCGACGAAGAGTTTCTCGCATTCACAGATCTCTATCGAGTCTCACCGTATTATCAATTTGCGCATTTCACCGCGAATCAAGTTATCTTAGAAACTTTTGAAAAAGAAGAAGAGAAAAATAACCGTTCGATACATGTGATTGATTTCGATGTTTCATACGGTTTTCAATGGCCTTCATTGATTCAATCTCTTTCGGAGAAAGCAACAAGTGGAAACAAGATCTCTCTCAGAATAACCGGATTCGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAGAGCATTGAAAGGTTAAGAATTGAAAAGAAGGTTTTTGGAAAAGAGATTAAGAGTATGCTTAATAATTATGATGTTGATGATGGTGTTGGTGTTGAATGTGCAAAATATGAAAAAATGGAAACATGGAAAAGTAGAATGGAGAATCATGGATTTGTTGGTATGAAAATGAGTTCAAAGTGTTTGATACAAGCTAAATTGTTACTTAAGATGAGGACAAATTATTGTCCACTTCAATTTGAGGAAGAAAGTGGCGGTGGCGGCGGTGGAGGTGGTGGTGGTTTCAGGGTTTCAGAAAGAGATGATGGAAAAGCTATTTCTTTAGGATGGCAAAATAGGTTTTTGCTAACTGTGTCAGCATGGCAATCACTTTGA 1092 0.3654 MEDSEEDELLNLSLSFNRERKNKGKTITRENNNVSMMSSTNRNPYEGYEGKIFRLLQMREQMLRKNTLNIEDSNGLPIIHLLLTTATSVDENNFDSSLENLTDLYQIVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQVILETFEKEEEKNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSGNKISLRITGFAMFDSLDDCLPLESIERLRIEKKVFGKEIKSMLNNYDVDDGVGVECAKYEKMETWKSRMENHGFVGMKMSSKCLIQAKLLLKMRTNYCPLQFEEESGGGGGGGGGGFRVSERDDGKAISLGWQNRFLLTVSAWQSL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05077 363 ProSiteProfiles GRAS family profile. 69 361 IPR005202 -
Trre1g05077 363 Pfam GRAS domain family 79 228 IPR005202 -
Trre1g05077 363 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 228 356 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05077 Trre-Chr1 57021656 57023068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05077 228 361 GRAS Transcription Factor Family AT1G21450 27.407 1.78e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre1g05077 GRAS 5.9e-38 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05077 - - gmx:100809458 347.821