Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05073 ATGTCTGGCAATTCAAGTTGCACCGTTTACATTGGCAATCTGGACGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCCGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACACTGAAGTTTGCGATATCTGGAAGGGACAAAAACACCCCTAATAGCTCTACAGCTACTACACCCACACCAAATTCTTCTCAACGACCAAGGCCATACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGCTTTCCTCTAGGCATTCAATACCTGACCGATTCTCGGATCATCCGGTAAATTATTCCCAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGCGGCAACCATATGGATTACAGTCGGAGAGTTTTTGGGGAGGCATTGGATAACGCTACCCGTTCTAGTTCTGGTTCTAGGTCACGCCGCCCTGATGGAATCAGCCCAATCTCTTATCCACCTTACTAA 606 0.4406 MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPTPNSSQRPRPYPVQINSSENFQLSSRHSIPDRFSDHPVNYSQVPPPHRVTDQPSGYGSHYSGNHMDYSRRVFGEALDNATRSSSGSRSRRPDGISPISYPPY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05073 201 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 197 - -
Trre1g05073 201 SMART rrm1_1 8 82 IPR000504 GO:0003723
Trre1g05073 201 MobiDBLite consensus disorder prediction 176 190 - -
Trre1g05073 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Trre1g05073 201 MobiDBLite consensus disorder prediction 126 201 - -
Trre1g05073 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Trre1g05073 201 MobiDBLite consensus disorder prediction 85 113 - -
Trre1g05073 201 Gene3D - 2 96 IPR012677 -
Trre1g05073 201 SUPERFAMILY RNA-binding domain, RBD 4 79 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05073 Trre-Chr1 56963723 56966683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05073 4 87 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 2.45e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05073 K12831 - gmx:100803118 300.056