Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05072 ATGTCTGGCAATTCAAGTTGCACCGTTTACATTGGCAATCTGGACGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCCGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACACTGAATGTATGGTCTGCTAATAAACAGATATCTGGAAGGGACAAAAACACCCCTAATAGCTCTACAGCTACTACACCCACACCAAATTCTTCTCAACGACCAAGGCCATACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGCTTTCCTCTAGGCATTCAATACCTGACCGATTCTCGGATCATCCGGTAAATTATTCCCAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGCGGCAACCATATGGATTACAGTCGGAGAGTTTTTGGGGAGGCATTGGATAACGCTACCCGTTCTAGTTCTGGTTCTAGGTCACGCCGCCCTGATGGAATCAGCCCAATCTCTTATCCACCTTACTAA 621 0.4364 MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLNVWSANKQISGRDKNTPNSSTATTPTPNSSQRPRPYPVQINSSENFQLSSRHSIPDRFSDHPVNYSQVPPPHRVTDQPSGYGSHYSGNHMDYSRRVFGEALDNATRSSSGSRSRRPDGISPISYPPY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05072 206 MobiDBLite consensus disorder prediction 131 206 - -
Trre1g05072 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Trre1g05072 206 Gene3D - 2 94 IPR012677 -
Trre1g05072 206 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Trre1g05072 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Trre1g05072 206 MobiDBLite consensus disorder prediction 181 195 - -
Trre1g05072 206 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 202 - -
Trre1g05072 206 SMART rrm1_1 8 82 IPR000504 GO:0003723
Trre1g05072 206 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05072 Trre-Chr1 56963723 56966683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05072 9 96 Eukaryotic Initiation Factors Gene Family AT1G22760 26.136 3.83e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05072 K12831 - gmx:100803118 287.345