Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05063 ATGGCTGACGTAGTTGCTGAAATCCCCACCAAGAAATCAAGAGTAACCAGAAAGGCTCTCAAGGAGAAAACCTCATCAACCAACGATGTCAACATCGTCTCGAACGAGTCAACAATTTCACCCCTTTCTGAGAATCTTTCTCAGCCCAAGAAGGGAAAAGCTGCATCAAAGAAACAACAGCAGCAGCCAAAACAACAATCTTTCGAGCAAGATTTGCTCGAGATGCAGGAAAAGACAGAGGAGTTGTTGAAAGCCAAAGATGAGATCTTGAAGCAAAAAGATGAAGAACTCGAAAATCGGGGGAAGGAGCAGGAGAAACTTCAAGTTGAGCTTAAGAAATTGCAGAAGTTGAAGGAATTCAAACCCACCATGAATTTGCCTATGGTGAAAGACAAGAAGAAGAATGCATGCCCTGAGAAAAAGAGGCCTACTCCAGCCTACATGTTATGGGTCAAAGACCAATGGCATGAGGTTGAGAAGGAAAATCCAGAAGCAGAATTTAAGGACATTTCAAACATGTTTGGTGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAAAAGCCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAGATTGAGGCAATGAAACTCTTGGAAGAAGAGCAGAAGCAGAAGACTATGCAAGGGTATCATGGAGGTTTCCAAGATCACCTCTGA 714 0.4188 MADVVAEIPTKKSRVTRKALKEKTSSTNDVNIVSNESTISPLSENLSQPKKGKAASKKQQQQPKQQSFEQDLLEMQEKTEELLKAKDEILKQKDEELENRGKEQEKLQVELKKLQKLKEFKPTMNLPMVKDKKKNACPEKKRPTPAYMLWVKDQWHEVEKENPEAEFKDISNMFGAKWKTVSAEEKKPYEEKYHAEKEAYLQVITKEKREIEAMKLLEEEQKQKTMQGYHGGFQDHL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05063 237 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 140 208 IPR009071 -
Trre1g05063 237 Coils Coil 72 117 - -
Trre1g05063 237 Pfam HMG (high mobility group) box 141 202 IPR009071 -
Trre1g05063 237 SUPERFAMILY HMG-box 125 203 IPR036910 -
Trre1g05063 237 Coils Coil 204 224 - -
Trre1g05063 237 CDD HMG-box_AtHMGB6-like_rpt1 141 208 - -
Trre1g05063 237 Gene3D High mobility group box domain 137 230 IPR036910 -
Trre1g05063 237 MobiDBLite consensus disorder prediction 10 24 - -
Trre1g05063 237 MobiDBLite consensus disorder prediction 25 70 - -
Trre1g05063 237 MobiDBLite consensus disorder prediction 1 76 - -
Trre1g05063 237 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 226 IPR044601 GO:0003677
Trre1g05063 237 SMART hmgende2 139 209 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05063 Trre-Chr1 56869876 56870589 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre1g05063 HMG_box 2.2e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05063 K09273 - gmx:100783033 249.595