Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05062 ATGGCAAAGAAGAACAAAGAGAAATATGCTGAAGAAATGGAAGCTTACAAACAGAAAAAAGAAGAGGAGGCTGCAAATCTGATGAAGGAAGAGGAAGAACATATGAAACTTCAGAAACATGAAGCCTTGCAATTACTCAAGAAGAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGTCAGAAGAAGAAACAACATATATTCTATTCAGCAAGGAAGAACATATTGGAGGAACGTCCAGGAGTTAGTGCAAACATGCTGAATACACTTGTTTCATTGAAGTGGAAAGATATGAGTGAGGAAGATAAACAAGTGTGGAATGGAAAAGCATCTGAAGCAATGGATGCATACAAGAAGAAAATGGAGGAATACAACAAATCAATTGTTGCAAAGCAGGAGCAGAAAACAGATGAAGAATAA 429 0.359 MAKKNKEKYAEEMEAYKQKKEEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQKKKQHIFYSARKNILEERPGVSANMLNTLVSLKWKDMSEEDKQVWNGKASEAMDAYKKKMEEYNKSIVAKQEQKTDEE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05062 142 Gene3D High mobility group box domain 69 142 IPR036910 -
Trre1g05062 142 Coils Coil 42 69 - -
Trre1g05062 142 Coils Coil 2 40 - -
Trre1g05062 142 Pfam HMG (high mobility group) box 74 128 IPR009071 -
Trre1g05062 142 Coils Coil 110 142 - -
Trre1g05062 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 138 IPR044601 GO:0003677
Trre1g05062 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 47 128 IPR009071 -
Trre1g05062 142 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g05062 142 SUPERFAMILY HMG-box 73 131 IPR036910 -
Trre1g05062 142 SMART hmgende2 65 129 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05062 Trre-Chr1 56869401 56869829 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre1g05062 HMG_box 1.8e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05062 K09273 - gmx:100783033 164.851