Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05054 ATGGAACAAAAAATGAAAACCACAACTTCTCCTCCTCAATTACCAATTCATATTCCTATTCACACCATGCTATCAAACTCTACACCATCTTCATCTTCTTCACCTCCTTTACAATCTCCCAAACCTTTCCCTTCACCGGCTTCTCAATATTCTCCTCCGTCTTCCGCTCTTCAACCACCATCTCCTCCACCACCAATTGTGGTTAGCCCTTGTGCTGCCTGTAAGATCCTTCGTAGAAGGTGTGTTGAGAAGTGTGTGTTAGCTCCTTATTTTCCTCCGACCGATCCACTCAAGTTCACAATTGCTCATAGAGTATTTGGAGCTAGCAACATTATTAAGTTTTTACAGGAATTACCTGAACCTCAAAGAGCAGATGCTGTAAGTAGCATGGTTTATGAAGCAAATGCTAGGATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAGCTACAAACACAGCTAGCTAAAGCACAAGCTGAGATAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTAATCAATCATCACCACAAGACCATAACATGATAATGAATCAGCCACAACCTCATGTTGATATGAGTTGTTTCTTAGAAGACAACAATTTTGGGTCTGCTTGGGAGCCTCTTTGGACATGA 687 0.4119 MEQKMKTTTSPPQLPIHIPIHTMLSNSTPSSSSSPPLQSPKPFPSPASQYSPPSSALQPPSPPPPIVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEIVNMHCQQANLVALICMEMSNQSSPQDHNMIMNQPQPHVDMSCFLEDNNFGSAWEPLWT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05054 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 69 200 - -
Trre1g05054 228 MobiDBLite consensus disorder prediction 1 34 - -
Trre1g05054 228 Pfam Lateral organ boundaries (LOB) domain 70 167 IPR004883 -
Trre1g05054 228 MobiDBLite consensus disorder prediction 35 62 - -
Trre1g05054 228 MobiDBLite consensus disorder prediction 1 62 - -
Trre1g05054 228 Coils Coil 149 176 - -
Trre1g05054 228 ProSiteProfiles LOB domain profile. 69 170 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05054 Trre-Chr1 56797842 56799441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05054 66 228 AS2 family AT1G07900 66.474 4.37e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g05054 LOB 6.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05054 - - gmx:100806667 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05054 1 56797842 56799441 Trre1g05054 1 56797842 56799441 ECH