Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05050 ATGGGGAGGAAAGGAAGTTGGTTTTCTTCTGTGAAGAAACTTTTCTTCATTTCTGATTCCAAAAAAGATCAGAAACCTCATAATCATAATCATAAGCCATCAAAGTTAACATGTTTTGGACATCATCATTATGATGATGCTGAGTGGAAAACTGGAGGAGTAGCACCAATAACTGTTGTTCCTGTTCCATCACTTCCGGCAAAAAAAGATGTCAAAAAACCGAAAAAAATTAAGGCAGAGGATGAACAGAACAAACAAGCTTTTTCGTTGATTTTAGCCACGGCCGTTGCTACCGGTGCTGCAGTTGCTGCTGCTCAGGCTGCTGCAGGGACCGCTCGTCTCAAAAGTATTCCTCGTTGTTATATTGGAAAATCAGATGAAGAAATAGCGGCTATCAAAATTCAAACCGCCTACCGCGGATATTTGGCAAGGAGAACGTTGCGTGGATTGAGAGGCTTGGCGAGGTTGAAAGCATTGGTGAAAGGACAATCTGTTCAACGACAAGCGGCTACTACATTACAATGCATGCAAACTCTTTCGCGATTGCAATCACAAGTTAGTGCGAGGAAGATAAGAATGTCAGAGGAGAATCAATCTTTCCAACGCCAACTTCAGCATAAACGCGAAAAGGAAATGGGAAAGTTACAAGCTGCCCAACCTATTGGAGAAGAATGGGATTATAGTTCACAATCAAAGGAGCAAATCCAAGCAAAATTGTTGAACAGACAAATAGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAGCAAACATGGAGGAACTCTTCAAAACCTACAGACGCAACAATTATGGATCCAAACAATCCTCATTGGGGATGGAATTGGCTTGATAGATGGATGGCTTCAAGGCCATGGGAAGGTCAAACCAATAAGGATCAAAAGAATCATAGATCAGCAAAAGGTGCTGCAAGCCATACTATGTCAGTTGGAGAAATTTCCAAATTATATGCTCAAAGAGATCAAAGTCATCAAGATAATAAAAATTCCCCTAGAAGCCAAAAACCAAATAATTCAAATCTAGCTTCAAGGGCTATACCTTCAACACCTAAAGGAAAAACCAAGACATTGAGTTCAAAGGGTGGTTCATGGGGTGGTGATGATGACTCAAAAACTATTTTCAACAATAAAAAATCCGAAACTAATCGAAGACATAGCATTGCGGTATCGCTATTGAAAGACGATGAAAGTATTGTAAACTCACCTTTAAAAGCTAAATCCAAAGTGCAAAGTCCTTCTACAAAGAAACAACTTTCTTTCCCAGCAGCAGCTTCTCCATCTGATTCTAGAAGGCATTCTGTTCCACCTAAAATTGGAATAAATTCTACTAAGAATGTTGCTACTAATCTCTCTGAAGTGAAAGGGAAAGTGAAAAATGGAGGGAGCAGATAG 1422 0.4001 MGRKGSWFSSVKKLFFISDSKKDQKPHNHNHKPSKLTCFGHHHYDDAEWKTGGVAPITVVPVPSLPAKKDVKKPKKIKAEDEQNKQAFSLILATAVATGAAVAAAQAAAGTARLKSIPRCYIGKSDEEIAAIKIQTAYRGYLARRTLRGLRGLARLKALVKGQSVQRQAATTLQCMQTLSRLQSQVSARKIRMSEENQSFQRQLQHKREKEMGKLQAAQPIGEEWDYSSQSKEQIQAKLLNRQIAAMRREKALAYASTHQQTWRNSSKPTDATIMDPNNPHWGWNWLDRWMASRPWEGQTNKDQKNHRSAKGAASHTMSVGEISKLYAQRDQSHQDNKNSPRSQKPNNSNLASRAIPSTPKGKTKTLSSKGGSWGGDDDSKTIFNNKKSETNRRHSIAVSLLKDDESIVNSPLKAKSKVQSPSTKKQLSFPAAASPSDSRRHSVPPKIGINSTKNVATNLSEVKGKVKNGGSR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05050 473 MobiDBLite consensus disorder prediction 413 455 - -
Trre1g05050 473 MobiDBLite consensus disorder prediction 258 274 - -
Trre1g05050 473 MobiDBLite consensus disorder prediction 339 375 - -
Trre1g05050 473 Gene3D iswi atpase 124 151 - -
Trre1g05050 473 Coils Coil 190 210 - -
Trre1g05050 473 PANTHER IQ-DOMAIN 5-RELATED 1 451 - -
Trre1g05050 473 SMART iq_5 126 148 IPR000048 GO:0005515
Trre1g05050 473 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
Trre1g05050 473 MobiDBLite consensus disorder prediction 330 389 - -
Trre1g05050 473 MobiDBLite consensus disorder prediction 258 278 - -
Trre1g05050 473 MobiDBLite consensus disorder prediction 297 318 - -
Trre1g05050 473 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Trre1g05050 473 MobiDBLite consensus disorder prediction 413 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05050 Trre-Chr1 56748232 56750342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05050 1 448 IQD Protein Family AT5G03040 41.429 1.08e-93 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05050 - - gmx:100807725 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05050 1 56748232 56750342 Trre1g05050 1 56748232 56750342 ECH