Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05041 ATGTTCGCAATGACTTCCATCAAGGGTATTGGAAGGCGGTTTGCTAACATTTGCTGTAAGAAAGCTGATGTTGACATGGACAAGAGGGCTGGTGAATCAAGTGCTGCGGAATTGGACAATTTGATGACAGTGGTTGCGAAGCCTCGTCAATTCAAGGTCCCATATTGGTTTTTGAACAGGGAGGATTTGAAGGATGGAAAAGGCTCTCAATTTGTCTCCAATGCTCTTGACATGAAGTTGAGGTATGATTTCAAGAGACTCAAGGAAATCAGAAACCATCGTGGTTTGAGGCACTGCTGGGGCATTCATGTTTGTGGTCAGCATACCAAGACTACCGGCCATAGGGGAAAGACTATATGCGTCTCAAGGAAGCGTTAA 378 0.4497 MFAMTSIKGIGRRFANICCKKADVDMDKRAGESSAAELDNLMTVVAKPRQFKVPYWFLNREDLKDGKGSQFVSNALDMKLRYDFKRLKEIRNHRGLRHCWGIHVCGQHTKTTGHRGKTICVSRKR 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05041 125 Gene3D 30s ribosomal protein s13, domain 2 65 115 IPR027437 -
Trre1g05041 125 ProSiteProfiles Ribosomal protein S13 family profile. 1 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre1g05041 125 FunFam 40S ribosomal protein S18 65 116 - -
Trre1g05041 125 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 124 - -
Trre1g05041 125 Pfam Ribosomal protein S13/S18 2 114 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre1g05041 125 SUPERFAMILY S13-like H2TH domain 2 119 IPR010979 GO:0003676
Trre1g05041 125 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 125 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre1g05041 125 Gene3D - 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05041 Trre-Chr1 56686795 56687172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05041 1 125 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 78.571 6.38e-70 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05041 K02964 - ini:109163819 204.912