Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05039 ATGCCGCCGGAACCATTGCCTTGGGATCGGAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCGGAGTCTCTTGGGTCGGTGGCGAGATGGAGAGACTCGTCTCATCATAGAGACTTCAATCGATGGGGATCCGCCGATTTTCGCAGACCACCGGGTCATGGTAAGCAGGGTGGTTGGCACATGTTTTCTGAAGAGCCTGGTCATGGTTATGGGGTTTCTCGGTCTGGTGACAAGATGTTGGAGGAAGATAGTCGGCCGTCAGTTTCACGGGGTGATGGAAAATATGGCAGGAGTAGTAGGGACAATAGAGGAGGTCCCTTTGGTCAGAGAGATTGGAGAGGTCATTCGTGGGAAGCCACCAATGGCACTCCAAATTTATCGAGGAGGCCACAAGATATGAATAATGATCAGAGGTCAGTTGATGATTCCCTAACATATTCCTCTCAACCGCATTCTGATTTTGTAAACACTTGGGAACAACATCAATTGAATGACCAGCATGATAAGATGGGTGGTGTTAATGGGTTGGGAACAGGCCCGAGATGTGATAGGGAGAATTCATTGGGTTCGATTGACTGGAAGCCACTTAAGTGGACCCGATCTGGAAGCTTGTCCTCTCGAGGCTCAGGTTTTAGTCACTCAAGCAGCTCAAGGAGCATGGCTGGGGGAGATTCCTATGAAGTAAAGCCTGATTTGCAACCCAAAAATGTCACTGCTATCGAGTCGCATTCAGGGGAAGCCACTGCATGTGTGACATCTTCTATGCCTTCTGAAGATACAACGTCTAGGAAGAAGCCTAGACTAAATTGGGGTGAAGGACTCGCAAAGTATGAGAAGAAAAAAGTTGACATACCTGATCCAGGAGCCAACAAAGATGGCTCGGTCTCATCTGCTGGTAATATGGAACCTTGTAATATGACCAGCCCCAACGTGTTAGATAAAAGCCCGAAAGGTACAGGATTTTCGGATTGTGCATCTCCTGCAACTCCGTCGTCTGTTGCTTGCAGTTCCTCACCAGGCGTGGATGATAAGTTATTGGGAAAGACAGCAGATGCAGGCAATGATGTTAGTAATTTGACTGATTCACCAGCTCCTGGGTTCCAGAATCACCTGCAGAAGTTTTATCTCAACCTTGATAGACTGGATATGGACTCCTTGAATAATTTGGGCTCTTCAATTGCCGAGTTAGTACAGTCTGATGATCCAAGTTCTGAAGATTCTGGTCTAGTTAGGTCCGATGCAATTAATAAGTTGCTGCTATGGAAAGCGGACATTTCGAAGGTGTTGGAGATGATGGAATCTGAAATTGATTTGCTTGAAAACGAACAAAAGTCTCTAAAATCTGAATCTGTGGATATATATCAGTGTCCAGTGGCATTAGGCTCAGAAGAACATAAAGTATCTCAGAAGGTCATTCGGCCAGTACCGTTGGAAATAATTTCTTCTGATGAACCCAATGCAGAGAAGATGCCGCCTAATTTATGTAGTATTCATGAAAATGACAAGGAAGAGGATATTGATAGTCCTGGATCAGCAACTTCTAAATTTGTTGAGCCGCCTTTGGTAAAAGCAGTTTCTTCATGTGATACTGGGGGATTTGGGAACTTTTCAAGGAACATGGATACTATTCGATCGACTTTGATGAAATGCCTAGTTCGCTGTACTACTAGGAAAGATGCTAGTGTATCTGCTTGTAATGATGTCAATACACCTACAGAAGTAAAGGAAAGCTTGGATGATGCTACTCACGGACCAAACTTATGTTCTAGCTATGAGGATACTTATAACTCAATTATTGCTTCAAATAAAGAATCTGCTAACAGAGCGCATGGAGTATTTGCTAAGTTAGTCCCAAATGAATGCAAAAAGCTTGGTAATATGGGAGTCAGTAGTGATATGTCCTCTCATACATTCATTATGGAAAAATTTGCTGAGAAAAAACGGTTTGAAAAATTTAAGGAGAGAGTTATTGCACTCAAGTTCAAAGCCTTGCACCACCTGTGGAAAGAAGATATGCGCCTACTGTCTGTTAGGAAATGCCGCCCAAAATCTCATAAGAAAAACGAACTAGGTGTGCGAACTACCTGTAGCAGTAATATGAAGAACCGATCTTCCATACGTTCACGGTTTCCTTTCCCTGCTGGAAATCATCTAAGCTTGGTTCCAACAACAGAGATCCTTAATTTCACAAGCAAACTTCTTTCAGAATCCCAACCTCAACGTCAGAGGAACAACCTAAGGATGCCAGCATTAATATTGGATGAGAAGGAGAAGATGGTTACAAAGTTCATATCTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGGGATATGATCAATCCTTGGATATCAGAAGAAAAAGAAATTTTCTTGGAGAAATTTGCTGTATTTGGAAAAGATTTCCGGAAAATTGCTTCTTTCCTTGATCACAAGACAACTGCGGACTGTGTTGAGTTCTACTACAAGAATCACAAATCTGAATGTTTTGAGAAACTGAAGAGGAAAGATGTTGGTAAGCTAGGGAAGTCATTTTCAGCGAAAACTAACTTGATGGCATCAGGTAATAAAAGGATGCGGTCAGGAAGATTCCTTTTAGGGGGATATGGTAATGTTAAAGCATCAAGAGCAGAGGACAGCAATATTGAGAGACCAAACAGTTTTGACATTCTTGGGGATGAAATGGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGTTCACTTTCATCTGAAGCTATGAGTTCCTGCATAACAAGTTCATTTGATCCTGTGGATGGTAACAAGGAAAGGAAGTTCTTGAGAGGGAACCCTCTATGCAAACAACCCTTGGTGCATGATATTTCTCAGAATGCTGATGATGAGACTTGTTCAGATGAGAGCTGTGGTGAAGTGGATGTTTCTGAGTGGACAGACGATGAGAAGGCAGCTTTTCTTCAGGCTGTATCATCGTTTGGTAAGGATTTCGCGAAGATAGCACGGTGTGTAGGTACAAGGTCCCGAGAACATTGCAAAGTTTTCTTCAGCAAGACTCGGAAAGTCCTTGGATTGAATCTTGCACACCCCATTCCTGGAATTGTCGAATCCCCGCTGCATGATGATGCAAATGGTGGTGAGAGTGACACAGATGATGCATGTGTTGTTGAGGCAGGCTCAGTGGTTGATGCTGATAAGTCTGGAAATAAAACAGACGAGGACCTGCCTTCTGATGCCTTGAATACATTCCATGACGAATCCAATCCTATGGAAGCTAGGAGCCCGTCAGCTGAATTAAATGAATCAAGAGAAATCAATGAGACAGAAGTTCGTCTTGAAAATGTAGACGTGGCTTCCAATGTTTGTGCAATTAAGGTTGAATCTAAGCTGGGATCTGATGGTAGTGGGGTTGACTTGGGCAAAACTGACAAGTCTGGTTCAGTCAATGGAGTTGGTTTGGGAGACGCAGTTGGAGAATCAATTTCTGCTTCGGGAGTAATTGAACCATGGGAGCATGGTTCTGTTGCTGTGGATAGACTGGTTTATGAGGGTTCTTCTGGGGTTTTTGGAAATGGAGTGGACAGGCAAATAGAGTCAGCACCTCAATGTGTTGATGACAGAGATGATAAACATGAAGCTGATGCAGGTATTGTAGTTGAGTTGAAAAACGGTGTGTTAGAGTCGAGCACTGCAGCAAATGTTTCATTCTCACCAGTGGTCAATTCATATTCAGGATTGAGTTTTGGTTCTGAAAATAAGCACGTGTCCTTTGGAAAGCCTCATACCTCAGCATTATCTACAAATGATCCTCGGTCAACCGTAAATTCATTGTTTCTAAAAGCTTCTGCTTCTCAGTGTGAAAAAACAGTTAACCAGGATAGACTGTCCTCAACTTGTGATGTTCAGGGAGGTAGAGATATGCGATGTCATAGCTCTGGTAGCAATGGTGAACATCAGCTTCCTCTTCCAGGGAGCCATGTCGAGACTGTCAGCGTCCTCCAGGGCTATCCCATGCAAGTGCCCATCAAGAAAGAAGTGGATGGGGATGTGATTCGCTGTAGTTCTGCGACTGATTTGCCTCTTCTGCCCCAAAAAGTTAAACAGACTGATGATCATTTCAAAACATTATGGCATTCTTCAGATTCAGAAAAAACTTCCGGAAATGGTGATGTGAAACTGAAACTGTTTGGAAAGATACTGACAAATCCTTCTTCCACTCAGAAACCTAATTTGATTACAAAGCGAAGTGAAGAAAACGGTACCAGTCATCCAAAGTTAAGCAACAAGACTTCTAATCTGAAATTTACTGGTCATCAAAATTCGGATGGAAATTTGAAAATTTTGAAGTTTGACCGTAGTGATTATGTTGGCCTTGAAAATGTTCCAGTGATGAGTTATGCTTATTGGGAGGGGAATGGAATACAGAGTAGACAGCCTGGTCTCTCATCAGTGCCCGATTCTTCGTTCTTGTTAGCTAAATATCCCGCTGCCTTTAGTAATTATCCTATACCATCCTCCAAATTGGAGCAACAACCATTGCAGGCATTTGCCAAGAATAGTGAACGGCATTTGACAGGTGCGTCCAGTTCATCTAGTTTTATAGCTAGAGACAACAATGGCAGCAATGCTATGCTTGATTATCAGATGTTTAGAAGTAGGGATGGTCCACAAATGCAGCCATTTATAGTAGATGTCAAACACCGCCAAGATGTATTCTCTGAGATGCAGAGAAGAAACAGTTTTGAAGCAATCTCTAGTTTGCAACAGCAGGGGAGGGGAATGATGGGAATGAATGGTGTTGGAAGACCTGGTATTCTAGTGGGAGGGTCGTGCAGTGGTGTCTCAGATCCCGTGGCTGCAATCAAAATGCATTATTCCAATTCTGACAACAAGTATGGTAGTCAGAATGGGAGTATTGTAAGAGAAGATGAATCTTGGGGAGGGAAGGGGGACTTAGGCAGGTAG 4959 0.4311 MPPEPLPWDRKDFFKERKHERSESLGSVARWRDSSHHRDFNRWGSADFRRPPGHGKQGGWHMFSEEPGHGYGVSRSGDKMLEEDSRPSVSRGDGKYGRSSRDNRGGPFGQRDWRGHSWEATNGTPNLSRRPQDMNNDQRSVDDSLTYSSQPHSDFVNTWEQHQLNDQHDKMGGVNGLGTGPRCDRENSLGSIDWKPLKWTRSGSLSSRGSGFSHSSSSRSMAGGDSYEVKPDLQPKNVTAIESHSGEATACVTSSMPSEDTTSRKKPRLNWGEGLAKYEKKKVDIPDPGANKDGSVSSAGNMEPCNMTSPNVLDKSPKGTGFSDCASPATPSSVACSSSPGVDDKLLGKTADAGNDVSNLTDSPAPGFQNHLQKFYLNLDRLDMDSLNNLGSSIAELVQSDDPSSEDSGLVRSDAINKLLLWKADISKVLEMMESEIDLLENEQKSLKSESVDIYQCPVALGSEEHKVSQKVIRPVPLEIISSDEPNAEKMPPNLCSIHENDKEEDIDSPGSATSKFVEPPLVKAVSSCDTGGFGNFSRNMDTIRSTLMKCLVRCTTRKDASVSACNDVNTPTEVKESLDDATHGPNLCSSYEDTYNSIIASNKESANRAHGVFAKLVPNECKKLGNMGVSSDMSSHTFIMEKFAEKKRFEKFKERVIALKFKALHHLWKEDMRLLSVRKCRPKSHKKNELGVRTTCSSNMKNRSSIRSRFPFPAGNHLSLVPTTEILNFTSKLLSESQPQRQRNNLRMPALILDEKEKMVTKFISSNGLVEDPLAIEKERDMINPWISEEKEIFLEKFAVFGKDFRKIASFLDHKTTADCVEFYYKNHKSECFEKLKRKDVGKLGKSFSAKTNLMASGNKRMRSGRFLLGGYGNVKASRAEDSNIERPNSFDILGDEMETAAAADVLAGICGSLSSEAMSSCITSSFDPVDGNKERKFLRGNPLCKQPLVHDISQNADDETCSDESCGEVDVSEWTDDEKAAFLQAVSSFGKDFAKIARCVGTRSREHCKVFFSKTRKVLGLNLAHPIPGIVESPLHDDANGGESDTDDACVVEAGSVVDADKSGNKTDEDLPSDALNTFHDESNPMEARSPSAELNESREINETEVRLENVDVASNVCAIKVESKLGSDGSGVDLGKTDKSGSVNGVGLGDAVGESISASGVIEPWEHGSVAVDRLVYEGSSGVFGNGVDRQIESAPQCVDDRDDKHEADAGIVVELKNGVLESSTAANVSFSPVVNSYSGLSFGSENKHVSFGKPHTSALSTNDPRSTVNSLFLKASASQCEKTVNQDRLSSTCDVQGGRDMRCHSSGSNGEHQLPLPGSHVETVSVLQGYPMQVPIKKEVDGDVIRCSSATDLPLLPQKVKQTDDHFKTLWHSSDSEKTSGNGDVKLKLFGKILTNPSSTQKPNLITKRSEENGTSHPKLSNKTSNLKFTGHQNSDGNLKILKFDRSDYVGLENVPVMSYAYWEGNGIQSRQPGLSSVPDSSFLLAKYPAAFSNYPIPSSKLEQQPLQAFAKNSERHLTGASSSSSFIARDNNGSNAMLDYQMFRSRDGPQMQPFIVDVKHRQDVFSEMQRRNSFEAISSLQQQGRGMMGMNGVGRPGILVGGSCSGVSDPVAAIKMHYSNSDNKYGSQNGSIVREDESWGGKGDLGR 1652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05039 1652 MobiDBLite consensus disorder prediction 323 342 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 76 109 - -
Trre1g05039 1652 Gene3D - 763 835 - -
Trre1g05039 1652 CDD SANT 975 1014 IPR001005 -
Trre1g05039 1652 SUPERFAMILY Homeodomain-like 973 1022 IPR009057 -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 1 152 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 1060 1100 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 1079 1094 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 117 152 - -
Trre1g05039 1652 SUPERFAMILY Homeodomain-like 770 831 IPR009057 -
Trre1g05039 1652 Coils Coil 423 450 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 294 315 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 323 339 - -
Trre1g05039 1652 Pfam Myb-like DNA-binding domain 975 1015 IPR001005 -
Trre1g05039 1652 SMART sant 972 1020 IPR001005 -
Trre1g05039 1652 SMART sant 783 831 IPR001005 -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 1403 1435 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 1064 1078 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 167 315 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 238 260 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 8 45 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 200 223 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 261 288 - -
Trre1g05039 1652 Gene3D - 943 1027 - -
Trre1g05039 1652 ProSiteProfiles SANT domain profile. 782 833 IPR017884 -
Trre1g05039 1652 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 861 1649 - -
Trre1g05039 1652 MobiDBLite consensus disorder prediction 1628 1652 - -
Trre1g05039 1652 ProSiteProfiles SANT domain profile. 971 1022 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05039 Trre-Chr1 56674646 56683627 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g05039 Myb_DNA-binding 6.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05039 - - gmx:100810588 2242.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05039 1 56674646 56683627 Trre1g05039 1 56674646 56683627 ECH