Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05038 ATGGGTTATTCCATATTCTATGTTGTTTTGTTTTTATCAATTTTTTGTGTTGGAATTTCATTGGCTTTTAACATAGAAGATCAAAAGAGAGACAAGATTGGTTTTTTACCAGGACAACCAAAGAATGTTGGATTTGAACAGTATTCAGGTTATGTTACTGTGAATGAAGAGAGTGGTAGAGCATTGTTTTATTGGTTGATTGAAGCACCATTGAATCGTGGACCTAAGTCTAGGCCACTAGTTTTATGGCTCAATGGTGGTCCTGGTTGTTCTTCTATTGCTTATGGTGCTTCTGAAGAAATTGGTCCTTTTCATATTAAGTCTGATGGCAAAACACTTTTCTTGAATCCTTATGCTTGGAACAATTTGGCAAATACATTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCTTATTGTAACAAATCAACAGATCTGTATACATTTGGTGACAAGAAAACAGCTGAGGATGCATATATTTTTCTAGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAGTTAGCTCAACTTGTTTACTGGAGAAATAAAGGAATCAATAATCCAGATATCAATTTTAAGGGATTTATGGTTGGAAATGGCGTTACCGATGATTATCATGATTATGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCAACATATAGGAATCTAAGAATTGCACGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTATGCAGGCTCTTAGACTTGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACACTGCCTTGTAACAATACCGGATCGCTCAAACGCGGATTGAACGGTCGTTATCCATGGATGTCTAGAGCGTATGATCCATGTACCGAAAGGTATTCTGATTTGTATTACAATCTCCCGGAAGTTCAGAAGGCGCTTCATGCCAATGTAACCGGGATTCCATATGCATGGAAGACATGCAGTGATGTTGTTGGGAATTATTGGACTGATTCTCCACTGTCTATGCTTCCTATATATCGAGAACTTATTAACGCCGGTCTAAAGATATGGGTTTTCAGTGGAGACACCGATAGTGTAGTTCCACTCACCGCAACTCGATATTCTATTGATGCCTTGAAGCTTCCGACCATCATCAACTGGTACCCTTGGTATGATAGTGGCAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGACTCACATTGGTTACAGTAAGAGGTGCAGGACACGAGGTTCCTCTTCATAAGCCTCGCGAAGCATTTATTCTTTTTAGATCATTCTTGGAGAACAAGTACATGCCATCAAGCTAA 1377 0.3885 MGYSIFYVVLFLSIFCVGISLAFNIEDQKRDKIGFLPGQPKNVGFEQYSGYVTVNEESGRALFYWLIEAPLNRGPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIKSDGKTLFLNPYAWNNLANTLFLDSPAGVGFSYCNKSTDLYTFGDKKTAEDAYIFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYWRNKGINNPDINFKGFMVGNGVTDDYHDYVGTFEYWWTHGLISDSTYRNLRIARDFGSSQHPSVQCMQALRLAVAEQGNIDPYSIYTLPCNNTGSLKRGLNGRYPWMSRAYDPCTERYSDLYYNLPEVQKALHANVTGIPYAWKTCSDVVGNYWTDSPLSMLPIYRELINAGLKIWVFSGDTDSVVPLTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTLVTVRGAGHEVPLHKPREAFILFRSFLENKYMPSS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05038 458 FunFam Carboxypeptidase 358 452 - -
Trre1g05038 458 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Trre1g05038 458 Gene3D - 358 451 - -
Trre1g05038 458 SUPERFAMILY alpha/beta-Hydrolases 30 456 IPR029058 -
Trre1g05038 458 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Trre1g05038 458 FunFam Carboxypeptidase 27 289 - -
Trre1g05038 458 Gene3D alpha/beta hydrolase 27 289 IPR029058 -
Trre1g05038 458 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Trre1g05038 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 439 IPR001563 GO:0004185|GO:0006508
Trre1g05038 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Trre1g05038 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Trre1g05038 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Trre1g05038 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Trre1g05038 458 Gene3D - 311 347 - -
Trre1g05038 458 FunFam Carboxypeptidase 308 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05038 Trre-Chr1 56658668 56661403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05038 321 453 Calmodulin-binding Proteins AT2G22960 29.104 1.43e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05038 K16297 - gmx:100805722 847.04