Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05037 ATGAGTTATTCCATTTCCATATTCTATGTTGTTTTGTTTTTGTCCATTTCCTATTTGGAAATTTCATTGGCTTCTAACATAGAAGATCAAAAGAGAGATAAAATTAGTTGGTTACCAGGGCAACCAAAGAATGTTGGATTTGAACAGTATTCAGGTTATGTGACTGTGAATGAGAAGAGAGGTAGAGCATTGTTTTATTGGTTGATTGAAGCACCGCTGAATCGTGGACCCGATTCAAGGCCACTGGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATAGCTTATGGTGCTTCCGAAGAAATTGGCCCTTTTCGTATTAGGCCTGATGGCAAGTCCCTTTACTTGAATCCTTATGCTTGGAATAATTTAGCAAACTTACTATTCCTTGATTCTCCTGTTGGTGTTGGTTTTTCTTATTGTAATAAATCAGAAGATATGCACACATTTGGTGACCAGAAAACAGCTGAGGATGCATATATTTTTCTAGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCCGGGGAAAGTTATGCAGGTCATTATGTTCTTCAGTTAGCTCAAATTGTTAACCAGAGAAATAAGGGAATCAATAATCCAGTTATAAATTTTAAGGGATTTATGGTTGGAAATGGTATGATCGATGATTATCATGATTATGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCAACATATAGGATGCTAAACATTGACTGTGATTTTACATCCATTCAGCGTCCATCAGCACAATGTTGGCATGCTCTTACAGTTGCAGATACTGAGCAAGGAGACATTGATGATTACAGCATTAATACACCACTTTGTAACTATACTGCGTCGCTCAAACGTGGCTTCAATGGTCGTTATCCATGGATGTATAGAGCATATGATCCTTGTGCTACAAGGTATTCTGATGTGTATTTCAATCGACCAGAAGTTCAAAAGGCACTTCATGCCAATGTAACTGGAATTTCATATGACTGGAAGGCATGCAGTAATATTGTTTTGAAGTATTGGACTGATTCACCATCGTCTATGCTTCCTATATATCAAGAACTTATTAATGCCGGTCTACGGATATGGGTATACAGTGGAGACACTGATGCTGTAATTCCACTGACCGCAACTCGATATTCAATTGGTGCGTTGAAGCTACAAACCATAATCAATTGGTACCCTTGGTATGATAATGGCAAGGTTTGTGGATGGAGTCAAGTTTATAAAGGGTTAACATTGGTGACAGTAAGAGATGCCGGACATGAAGTTCCTCTTCATAAGCCTCGCGAGGCATTTATTCTTTTTAGATCATTCTTGGAGAACAAGTATATGCCATCAGAAGAATAA 1386 0.3788 MSYSISIFYVVLFLSISYLEISLASNIEDQKRDKISWLPGQPKNVGFEQYSGYVTVNEKRGRALFYWLIEAPLNRGPDSRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKSLYLNPYAWNNLANLLFLDSPVGVGFSYCNKSEDMHTFGDQKTAEDAYIFLVNWFERFPQYKHREFYIAGESYAGHYVLQLAQIVNQRNKGINNPVINFKGFMVGNGMIDDYHDYVGTFEYWWTHGLISDSTYRMLNIDCDFTSIQRPSAQCWHALTVADTEQGDIDDYSINTPLCNYTASLKRGFNGRYPWMYRAYDPCATRYSDVYFNRPEVQKALHANVTGISYDWKACSNIVLKYWTDSPSSMLPIYQELINAGLRIWVYSGDTDAVIPLTATRYSIGALKLQTIINWYPWYDNGKVCGWSQVYKGLTLVTVRDAGHEVPLHKPREAFILFRSFLENKYMPSEE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05037 461 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Trre1g05037 461 FunFam Carboxypeptidase 360 454 - -
Trre1g05037 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Trre1g05037 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Trre1g05037 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Trre1g05037 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Trre1g05037 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Trre1g05037 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Trre1g05037 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 441 IPR001563 GO:0004185|GO:0006508
Trre1g05037 461 Gene3D - 360 453 - -
Trre1g05037 461 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Trre1g05037 461 FunFam Carboxypeptidase 29 291 - -
Trre1g05037 461 SUPERFAMILY alpha/beta-Hydrolases 31 458 IPR029058 -
Trre1g05037 461 Gene3D - 313 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05037 Trre-Chr1 56651804 56654329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05037 323 455 Calmodulin-binding Proteins AT2G22960 29.104 1.24e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05037 K16297 - gmx:100805722 781.171